miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 244 bits (123), Expect = 3e-64
Identities = 137/144 (95%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcaatactaactcatgaacatacacacatgatggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatactaactcatgaacatacacacatgatggaag 65
Query: 61 tgaatacaaagagaatctacattctcttatgtttcannnnnnnaattgagttagttcttc 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 66 tgaatacaaagagaatctacattctcttatgtttcatttttttaattgagttagttcttc 125
Query: 121 atgtgcccctcttccccatcatga 144
||||||||||||||||||||||||
Sbjct: 126 atgtgcccctcttccccatcatga 149
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 77.8 bits (39), Expect = 4e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcaatactaactcatgaaca 43
|||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatgctaactcatgaaca 48
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 107 tgagttagttcttcatgtgcccctcttccccatcatga 144
||||||||| ||||||||||||||||||||||||||||
Sbjct: 254 tgagttagtgcttcatgtgcccctcttccccatcatga 291
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 73.8 bits (37), Expect = 6e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcaatactaactcatgaacatacaca 49
|||||||||||||||||||||||||| |||||||||||| ||| |||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactaactcatgcacacacaca 54
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 107 tgagttagttcttcatgtgcccctcttccccatcatga 144
|||||||||| ||||||||||| |||||||||||||||
Sbjct: 105 tgagttagtttttcatgtgcccatcttccccatcatga 142
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 73.8 bits (37), Expect = 6e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcaatactaactcatgaa 41
||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaacactaactcatgaa 46
Score = 63.9 bits (32), Expect = 6e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 109 agttagttcttcatgtgcccctcttccccatcatga 144
||||||| ||||||||||||||||||||||||||||
Sbjct: 251 agttagtacttcatgtgcccctcttccccatcatga 286
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 69.9 bits (35), Expect = 9e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcaatactaactcatg 39
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactaactcatg 44
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 107 tgagttagttcttcatgtgcccctcttccccatcatga 144
|||||||||||||||||||||| |||||||||||||||
Sbjct: 74 tgagttagttcttcatgtgcccgtcttccccatcatga 111
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 69.9 bits (35), Expect = 9e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcaatactaactcatg 39
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactaactcatg 44
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 108 gagttagttcttcatgtgcccctcttccccatcatga 144
|||||||||||||||||||| |||||||||||||||
Sbjct: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 69.9 bits (35), Expect = 9e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcaatactaactcatg 39
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactaactcatg 44
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 110 gttagttcttcatgtgcccctcttccccatcatga 144
||||||||||||||||||| |||||||||||||||
Sbjct: 86 gttagttcttcatgtgcccgtcttccccatcatga 120
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 108 gagttagttcttcatgtgcccctcttccccatcatga 144
||||| |||||||||||||||||||||||||||||||
Sbjct: 120 gagttggttcttcatgtgcccctcttccccatcatga 156
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcaatactaactcatg 39
|||||||||||||||||||||||||| ||||| ||||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactagctcatg 44
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 63.9 bits (32), Expect = 6e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 4 gatggagaagcagggcacgtgcaatactaactcatg 39
||||||||||||||||||||||| ||||||||||||
Sbjct: 1 gatggagaagcagggcacgtgcactactaactcatg 36
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 4 gatggagaagcagggcacgtgcaatactaactcatgaaca 43
||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 9 gatggagaagcagggcacgtgcaatgctaactcatcaaca 48
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 118 ttcatgtgcccctcttccccatcatga 144
|||||||||||||||||||||||||||
Sbjct: 69 ttcatgtgcccctcttccccatcatga 95
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcaatactaactcat 38
|||||||||||||||||||||||||| ||||| |||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactagctcat 43
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 107 tgagttagttcttcatgtgcccctcttccccatcatga 144
|||||||||||||||||||||| ||||| |||||||||
Sbjct: 130 tgagttagttcttcatgtgcccatcttcaccatcatga 167
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcaatactaactcat 38
|||||||||||||||||||||||||| ||||| |||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactagctcat 43
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 107 tgagttagttcttcatgtgcccctcttccccatcatga 144
|||||||||||||||||||||| ||||| |||||||||
Sbjct: 129 tgagttagttcttcatgtgcccatcttcaccatcatga 166
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcaatactaactcat 38
|||||||||||||||||||||||||| ||||| |||||
Sbjct: 6 caagatggagaagcagggcacgtgcattactagctcat 43
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 107 tgagttagttcttcatgtgcccctcttccccatcatga 144
|||||||||||||||||||||| ||||| |||||||||
Sbjct: 128 tgagttagttcttcatgtgcccatcttcaccatcatga 165
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcaatacta 32
|||||||||||||||||||||||||| |||||
Sbjct: 6 caagatggagaagcagggcacgtgcattacta 37
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 caagatggagaagcagggcacgtgcaatact 31
|||||||||||||||||||||||||| ||||
Sbjct: 6 caagatggagaagcagggcacgtgcattact 36
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 111 ttagttcttcatgtgcccctcttccccatcatga 144
||||||||||||||||||||||| |||||||||
Sbjct: 57 ttagttcttcatgtgcccctcttttccatcatga 90
>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
(castor bean)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcaat 28
|||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaat 33
>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcaat 28
|||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaat 33
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 gatggagaagcagggcacgtgca 26
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 gatggagaagcagggcacgtgca 26
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya
(papaya)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcaa 27
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;ABIM01024497.1/24000-24085 3649:Carica papaya
(papaya)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcaa 27
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 gatggagaagcagggcacgtgc 25
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcaa 27
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AY871042.1/1-85 3694:Populus trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcaa 27
||||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgcaa 24
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcaa 27
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AY728400.1/2-73 3694:Populus trichocarpa
Length = 72
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcaa 27
||||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgcaa 24
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcaa 27
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AC167403.2/113120-113214 3880:Medicago truncatula
(barrel medic)
Length = 95
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcaa 27
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AC235335.1/132786-132675 3847:Glycine max
(soybean)
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcaa 27
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacgtgcaa 27
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
