miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AC152057.11/32164-32084 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 143 bits (72), Expect = 3e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 cacgttggagaagcagggcacatgcttgattttatcaaagttctgagcatgtgctcttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cacgttggagaagcagggcacatgcttgattttatcaaagttctgagcatgtgctcttgc 65
Query: 61 tctccatcatgg 72
||||||||||||
Sbjct: 66 tctccatcatgg 77
>RF00647;MIR164;AP009712.1/25839-25750 34305:Lotus japonicus
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 cacgttggagaagcagggcacatgcttga 29
|||| ||||||||||||||||||||||||
Sbjct: 6 cacgctggagaagcagggcacatgcttga 34
>RF00647;MIR164;AASG02000725.1/15292-15200 3988:Ricinus communis
(castor bean)
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacatgcttgattt 32
||||||||||||||||||||| |||||
Sbjct: 11 tggagaagcagggcacatgctagattt 37
>RF00647;MIR164;ABIM01007299.1/659-745 3649:Carica papaya (papaya)
Length = 87
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacatgct 26
|||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacatgct 31
>RF00647;MIR164;AC182692.2/98036-98127 3694:Populus trichocarpa
Length = 92
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacatgct 26
|||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacatgct 31
>RF00647;MIR164;CAAP02000007.1/54906-54816 29760:Vitis vinifera
Length = 91
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacatgct 26
|||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacatgct 31
