miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;CT009488.4/103389-103285 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 gctgagaggaacgcagtctggctcgaggaatgctcagatctgttttgatctgatcgatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgagaggaacgcagtctggctcgaggaatgctcagatctgttttgatctgatcgatat 60
Query: 61 gttcatatctaattaattctcggaccaggcttcattcctcccatc 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttcatatctaattaattctcggaccaggcttcattcctcccatc 105
>RF00075;mir-166;AY664417.1/307265-307178 4577:Zea mays
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctccca 103
||||||||||||||||||||||||||
Sbjct: 61 tctcggaccaggcttcattcctccca 86
>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
(papaya)
Length = 125
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 attctcggaccaggcttcattcctccca 103
||||||||||||||||||||||| ||||
Sbjct: 96 attctcggaccaggcttcattcccccca 123
>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa subsp.
pekinensis
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 attctcggaccaggcttcattcctccca 103
||||||||||||||||||||||| ||||
Sbjct: 58 attctcggaccaggcttcattcccccca 85
>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana (thale
cress)
Length = 111
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 attctcggaccaggcttcattcctccca 103
||||||||||||||||||||||| ||||
Sbjct: 82 attctcggaccaggcttcattcccccca 109
>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
trichocarpa
Length = 144
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 attctcggaccaggcttcattcct 99
||||||||||||||||||||||||
Sbjct: 115 attctcggaccaggcttcattcct 138
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 76 attctcggaccaggcttcattcctccca 103
||||||||||||||||||||||| ||||
Sbjct: 78 attctcggaccaggcttcattcccccca 105
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctc 100
|||||||||||||||||||||||
Sbjct: 86 tctcggaccaggcttcattcctc 108
>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 attctcggaccaggcttcattcc 98
|||||||||||||||||||||||
Sbjct: 89 attctcggaccaggcttcattcc 111
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 attctcggaccaggcttcattcc 98
|||||||||||||||||||||||
Sbjct: 71 attctcggaccaggcttcattcc 93
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctc 100
|||||||||||||||||||||||
Sbjct: 154 tctcggaccaggcttcattcctc 176
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctc 100
|||||||||||||||||||||||
Sbjct: 139 tctcggaccaggcttcattcctc 161
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 attctcggaccaggcttcattcc 98
|||||||||||||||||||||||
Sbjct: 128 attctcggaccaggcttcattcc 150
>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctc 100
|||||||||||||||||||||||
Sbjct: 89 tctcggaccaggcttcattcctc 111
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctc 100
|||||||||||||||||||||||
Sbjct: 108 tctcggaccaggcttcattcctc 130
>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus trichocarpa
Length = 317
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcct 99
||||||||||||||||||||||
Sbjct: 290 tctcggaccaggcttcattcct 311
>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus trichocarpa
Length = 324
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcct 99
||||||||||||||||||||||
Sbjct: 297 tctcggaccaggcttcattcct 318
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctccca 103
||||||||||||||||||||| ||||
Sbjct: 67 tctcggaccaggcttcattcccccca 92
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus trichocarpa
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctccca 103
||||||||||||||||||||| ||||
Sbjct: 65 tctcggaccaggcttcattcccccca 90
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctccca 103
||||||||||||||||||||| ||||
Sbjct: 67 tctcggaccaggcttcattcccccca 92
>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
(barrel medic)
Length = 170
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcct 99
||||||||||||||||||||||
Sbjct: 143 tctcggaccaggcttcattcct 164
>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctccca 103
||||||||||||||||||||| ||||
Sbjct: 77 tctcggaccaggcttcattcccccca 102
>RF00075;mir-166;BABK01008352.1/1692-1590 34305:Lotus japonicus
Length = 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttctcggaccaggcttcattcc 98
||||||||||||||||||||||
Sbjct: 75 ttctcggaccaggcttcattcc 96
>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcct 99
||||||||||||||||||||||
Sbjct: 95 tctcggaccaggcttcattcct 116
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctccca 103
||||||||||||||||||||| ||||
Sbjct: 63 tctcggaccaggcttcattcccccca 88
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 ctcggaccaggcttcattcctc 100
||||||||||||||||||||||
Sbjct: 72 ctcggaccaggcttcattcctc 93
>RF00075;mir-166;AY664413.1/238586-238494 4577:Zea mays
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctccca 103
||||||||||||||||||||| ||||
Sbjct: 66 tctcggaccaggcttcattcccccca 91
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctccca 103
||||||||||||||||||||| ||||
Sbjct: 187 tctcggaccaggcttcattcccccca 212
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctccca 103
||||||||||||||||||||| ||||
Sbjct: 164 tctcggaccaggcttcattcccccca 189
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctccca 103
||||||||||||||||||||| ||||
Sbjct: 133 tctcggaccaggcttcattcccccca 158
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctccca 103
||||||||||||||||||||| ||||
Sbjct: 153 tctcggaccaggcttcattcccccca 178
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tctcggaccaggcttcattcctccca 103
||||||||||||||||||||| ||||
Sbjct: 152 tctcggaccaggcttcattcccccca 177
