miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;CT009488.4/103549-103459 3880:Medicago truncatula
(barrel medic)
Length = 91
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgcctggctcaaggcttttcatagtttgatctatctactatgatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgaggggaatgttgcctggctcaaggcttttcatagtttgatctatctactatgatta 60
Query: 61 aggcttcgggccaggcttcatccccctcaaa 91
|||||||||||||||||||||||||||||||
Sbjct: 61 aggcttcgggccaggcttcatccccctcaaa 91
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgcctggctcaaggcttttca 35
||||||||||||||| ||||||| ||||||||||
Sbjct: 2 ttgaggggaatgttggctggctcgaggcttttca 35
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 59 taaggcttcgggccaggcttcatccccctcaaa 91
||||||||||| ||||||||||| |||||||||
Sbjct: 74 taaggcttcggaccaggcttcattcccctcaaa 106
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgcctggctcaaggcttttca 35
||||||||||||||| ||||||| ||||||||||
Sbjct: 2 ttgaggggaatgttggctggctcgaggcttttca 35
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 59 taaggcttcgggccaggcttcatccccctcaaa 91
||||||||||| ||||||||||| |||||||||
Sbjct: 91 taaggcttcggaccaggcttcattcccctcaaa 123
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 58 ttaaggcttcgggccaggcttcatccccctcaa 90
|||||||||||| ||||||||||| ||||||||
Sbjct: 63 ttaaggcttcggaccaggcttcattcccctcaa 95
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgcctggctcaaggcttt 32
|||||||||||||||| ||||||| |||||||
Sbjct: 1 gttgaggggaatgttggctggctcgaggcttt 32
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 60 aaggcttcgggccaggcttcatccccctcaaa 91
|||||||||| ||||||||||| |||||||||
Sbjct: 69 aaggcttcggaccaggcttcattcccctcaaa 100
