miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AC157504.2/33729-33983 3880:Medicago truncatula
(barrel medic)
Length = 255
Score = 476 bits (240), Expect = e-134
Identities = 240/240 (100%)
Strand = Plus / Plus
Query: 1 agatgaagccaaggatgacttgccggtataatagtaatttgccacaaatctagatagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 agatgaagccaaggatgacttgccggtataatagtaatttgccacaaatctagatagcta 66
Query: 61 ttagctatgtttggatgggcggtgagattaacaaaattacagcagcattgtgattttgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ttagctatgtttggatgggcggtgagattaacaaaattacagcagcattgtgattttgtt 126
Query: 121 gatgctttaaagtgtagtttttatcaaaattacagtggttcactgtaattatgagaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gatgctttaaagtgtagtttttatcaaaattacagtggttcactgtaattatgagaatct 186
Query: 181 caccgtcaatctaaatatgcatttagtttcatttccggcaggtcatccttcggctatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 caccgtcaatctaaatatgcatttagtttcatttccggcaggtcatccttcggctatatt 246
>RF00645;MIR169_2;AC157504.2/38883-38997 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 215 ccggcaggtcatccttcggctatatt 240
||||||||||||||||||||||||||
Sbjct: 81 ccggcaggtcatccttcggctatatt 106
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggtataatagt 35
|||||||||||||||||||||||| ||||
Sbjct: 13 agccaaggatgacttgccggtatattagt 41
>RF00645;MIR169_2;BABK01035994.1/667-569 34305:Lotus japonicus
Length = 99
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 atgaagccaaggatgacttgccgg 26
||||||||||||||||||||||||
Sbjct: 9 atgaagccaaggatgacttgccgg 32
>RF00645;MIR169_2;BABK01022237.1/713-821 34305:Lotus japonicus
Length = 109
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgaagccaaggatgacttgccgg 26
|||||||||||||||||||||||
Sbjct: 10 tgaagccaaggatgacttgccgg 32
>RF00645;MIR169_2;ABIM01016748.1/13946-13822 3649:Carica papaya
(papaya)
Length = 125
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 agatgaagccaaggatgacttgccgg 26
||||| ||||||||||||||||||||
Sbjct: 10 agatgcagccaaggatgacttgccgg 35
>RF00645;MIR169_2;AB012243.1/43077-42837 3702:Arabidopsis thaliana
(thale cress)
Length = 241
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggta 28
||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggta 37
>RF00645;MIR169_2;AC135313.13/45543-45452 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggta 28
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggta 34
>RF00645;MIR169_2;AP005769.3/167010-166879 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggta 28
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggta 34
