miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AC146747.7/125787-125634 3880:Medicago truncatula
(barrel medic)
Length = 154
Score = 276 bits (139), Expect = 7e-74
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 1 tttataagccaaggatgacttgcctagctaaaaaccatttacattaattggggacttaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttataagccaaggatgacttgcctagctaaaaaccatttacattaattggggacttaat 67
Query: 61 ttgtatatgttatgtctgatcgatgatgagtatgtcccttgtttagtttattagcaggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ttgtatatgttatgtctgatcgatgatgagtatgtcccttgtttagtttattagcaggca 127
Query: 121 ggtatcctaggctttttga 139
|||||||||||||||||||
Sbjct: 128 ggtatcctaggctttttga 146
>RF00645;MIR169_2;CU468266.5/898-777 3880:Medicago truncatula
(barrel medic)
Length = 122
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 5 taagccaaggatgacttgcctagctaaaaaccatt 39
||||||||||||||||||||| |||||||||||||
Sbjct: 13 taagccaaggatgacttgcctggctaaaaaccatt 47
Score = 58.0 bits (29), Expect = 3e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 84 tgatgagtatgtcccttgtttagtttattagcaggcagg-tatcctaggctttttga 139
|||||||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct: 58 tgatgagtatgtcccttgtttagttttccggcaggcgggttatcctaggctttttga 114
>RF00865;MIR169_5;CU468266.5/4267-4422 3880:Medicago truncatula
(barrel medic)
Length = 156
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 7 agccaaggatgacttgcctagctaaaa 33
|||||||||||||||||||||||||||
Sbjct: 135 agccaaggatgacttgcctagctaaaa 109
>RF00645;MIR169_2;CU468266.5/4414-4273 3880:Medicago truncatula
(barrel medic)
Length = 142
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgcctagctaaaa 33
|||||||||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgcctagctaaaa 40
>RF00865;MIR169_5;ABXC01002768.1/23520-23657 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 agccaaggatgacttgcctagcta 30
||||||||||||||||||||||||
Sbjct: 115 agccaaggatgacttgcctagcta 92
>RF00645;MIR169_2;ABXC01002768.1/23650-23526 4558:Sorghum bicolor
(sorghum)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgcctagcta 30
||||||||||||||||||||||||
Sbjct: 17 agccaaggatgacttgcctagcta 40
