miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AC135313.13/36796-36697 3880:Medicago truncatula
          (barrel medic)
          Length = 100

 Score =  170 bits (86), Expect = 2e-42
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatttgagccaaagatgacttgccggcatgctgcctgaaaagcaagaagggtgttgtttt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7  gatttgagccaaagatgacttgccggcatgctgcctgaaaagcaagaagggtgttgtttt 66

                                    
Query: 61 gctggcagttgtcattggttcatgtt 86
          ||||||||||||||||||||||||||
Sbjct: 67 gctggcagttgtcattggttcatgtt 92




>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
          Length = 115

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 2  atttgagccaaagatgacttgccggcatgc 31
          ||||||||||| ||||||||||||||||||
Sbjct: 8  atttgagccaaggatgacttgccggcatgc 37




>RF00645;MIR169_2;BABK01041096.1/153-266 34305:Lotus japonicus
          Length = 114

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 5  tgagccaaagatgacttgccggcatgc 31
          |||||||| ||||||||||||||||||
Sbjct: 11 tgagccaaggatgacttgccggcatgc 37




>RF00645;MIR169_2;AC157504.2/27710-27818 3880:Medicago truncatula
          (barrel medic)
          Length = 109

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 2  atttgagccaaagatgacttgccggc 27
          ||||||||||| ||||||||||||||
Sbjct: 8  atttgagccaaggatgacttgccggc 33




>RF00645;MIR169_2;BABK01041096.1/428-555 34305:Lotus japonicus
          Length = 128

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 2  atttgagccaaagatgacttgccggcatgc 31
          ||||||||||| ||||||||| ||||||||
Sbjct: 8  atttgagccaaggatgacttgtcggcatgc 37