miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AC157504.2/38883-38997 3880:Medicago truncatula
           (barrel medic)
          Length = 115

 Score =  198 bits (100), Expect = 9e-51
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatggagccaaggatgacttgccggtatattagtttgtcgctaaagctaactagcttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7   aaatggagccaaggatgacttgccggtatattagtttgtcgctaaagctaactagcttta 66

                                                   
Query: 61  gttgttgggtactcccggcaggtcatccttcggctatatt 100
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  gttgttgggtactcccggcaggtcatccttcggctatatt 106




>RF00645;MIR169_2;AC157504.2/33729-33983 3880:Medicago truncatula
           (barrel medic)
          Length = 255

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  ccggcaggtcatccttcggctatatt 100
           ||||||||||||||||||||||||||
Sbjct: 221 ccggcaggtcatccttcggctatatt 246



 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 7  agccaaggatgacttgccggtatattagt 35
          |||||||||||||||||||||||| ||||
Sbjct: 13 agccaaggatgacttgccggtataatagt 41




>RF00645;MIR169_2;AP005769.3/167010-166879 39947:Oryza sativa
          Japonica Group
          Length = 132

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 2  aatggagccaaggatgacttgccggta 28
          |||| ||||||||||||||||||||||
Sbjct: 8  aatgcagccaaggatgacttgccggta 34




>RF00865;MIR169_5;AACV01018924.1/12529-12684 39947:Oryza sativa
           Japonica Group
          Length = 156

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 7   agccaaggatgacttgccggtatatt 32
           |||||||||||||||||| |||||||
Sbjct: 136 agccaaggatgacttgcctgtatatt 111




>RF00645;MIR169_2;AB012243.1/43077-42837 3702:Arabidopsis thaliana
          (thale cress)
          Length = 241

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  agccaaggatgacttgccggta 28
          ||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggta 37




>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
          (thale cress)
          Length = 127

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  gagccaaggatgacttgccggt 27
          ||||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccggt 33




>RF00645;MIR169_2;AC135313.13/45543-45452 3880:Medicago truncatula
          (barrel medic)
          Length = 92

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  agccaaggatgacttgccggta 28
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggta 34




>RF00645;MIR169_2;BABK01035994.1/667-569 34305:Lotus japonicus
          Length = 99

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  aaatggagccaaggatgacttgccgg 26
          ||||| ||||||||||||||||||||
Sbjct: 7  aaatgaagccaaggatgacttgccgg 32




>RF00645;MIR169_2;AM489765.1/426-571 4102:Petunia x hybrida
          Length = 146

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  aaatggagccaaggatgacttgccgg 26
          ||||| ||||||||||||||||||||
Sbjct: 10 aaatgcagccaaggatgacttgccgg 35




>RF00645;MIR169_2;AP008214.1/26806653-26806795 39947:Oryza sativa
          Japonica Group
          Length = 143

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 7  agccaaggatgacttgccggtatatt 32
          |||||||||||||||||| |||||||
Sbjct: 14 agccaaggatgacttgcctgtatatt 39