miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AC157504.2/38883-38997 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 198 bits (100), Expect = 9e-51
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 aaatggagccaaggatgacttgccggtatattagtttgtcgctaaagctaactagcttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 aaatggagccaaggatgacttgccggtatattagtttgtcgctaaagctaactagcttta 66
Query: 61 gttgttgggtactcccggcaggtcatccttcggctatatt 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gttgttgggtactcccggcaggtcatccttcggctatatt 106
>RF00645;MIR169_2;AC157504.2/33729-33983 3880:Medicago truncatula
(barrel medic)
Length = 255
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 75 ccggcaggtcatccttcggctatatt 100
||||||||||||||||||||||||||
Sbjct: 221 ccggcaggtcatccttcggctatatt 246
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggtatattagt 35
|||||||||||||||||||||||| ||||
Sbjct: 13 agccaaggatgacttgccggtataatagt 41
>RF00645;MIR169_2;AP005769.3/167010-166879 39947:Oryza sativa
Japonica Group
Length = 132
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 aatggagccaaggatgacttgccggta 28
|||| ||||||||||||||||||||||
Sbjct: 8 aatgcagccaaggatgacttgccggta 34
>RF00865;MIR169_5;AACV01018924.1/12529-12684 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 7 agccaaggatgacttgccggtatatt 32
|||||||||||||||||| |||||||
Sbjct: 136 agccaaggatgacttgcctgtatatt 111
>RF00645;MIR169_2;AB012243.1/43077-42837 3702:Arabidopsis thaliana
(thale cress)
Length = 241
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggta 28
||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggta 37
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gagccaaggatgacttgccggt 27
||||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccggt 33
>RF00645;MIR169_2;AC135313.13/45543-45452 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggta 28
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggta 34
>RF00645;MIR169_2;BABK01035994.1/667-569 34305:Lotus japonicus
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aaatggagccaaggatgacttgccgg 26
||||| ||||||||||||||||||||
Sbjct: 7 aaatgaagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AM489765.1/426-571 4102:Petunia x hybrida
Length = 146
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aaatggagccaaggatgacttgccgg 26
||||| ||||||||||||||||||||
Sbjct: 10 aaatgcagccaaggatgacttgccgg 35
>RF00645;MIR169_2;AP008214.1/26806653-26806795 39947:Oryza sativa
Japonica Group
Length = 143
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 agccaaggatgacttgccggtatatt 32
|||||||||||||||||| |||||||
Sbjct: 14 agccaaggatgacttgcctgtatatt 39