miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
          Length = 102

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 74/84 (88%), Gaps = 5/84 (5%)
 Strand = Plus / Plus

                                                                      
Query: 18 tttgatgttggcttgtctcaatcaaatcaaagttcttgaa-----atttgagttctttag 72
          ||||||||||||| | ||||||||||||||||||||| ||     |||||||| ||||||
Sbjct: 8  tttgatgttggctaggctcaatcaaatcaaagttcttaaatagagatttgagtactttag 67

                                  
Query: 73 tctgattgagtcgtgccaatatca 96
          |||||||||| |||||||||||||
Sbjct: 68 tctgattgagccgtgccaatatca 91




>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
           (papaya)
          Length = 113

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 37/39 (94%), Gaps = 1/39 (2%)
 Strand = Plus / Plus

                                                  
Query: 60  ttgagttcttt-agtctgattgagtcgtgccaatatcat 97
           ||||||||||| |||||||||||| ||||||||||||||
Sbjct: 67  ttgagttcttttagtctgattgagccgtgccaatatcat 105




>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
          (castor bean)
          Length = 101

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 61 tgagttctttagtctgattgagtcgtgccaatatc 95
          ||||||||||| |||||||||| ||||||||||||
Sbjct: 55 tgagttctttaatctgattgagccgtgccaatatc 89




>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
          Length = 97

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 60 ttgagttctttagtctgattgagtcgtgccaatatcat 97
          |||||| ||||| |||||||||| ||||||||||||||
Sbjct: 50 ttgagtcctttaatctgattgagccgtgccaatatcat 87




>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
          Length = 99

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 67 ctttagtctgattgagtcgtgccaatatcat 97
          ||||| |||||||||| ||||||||||||||
Sbjct: 59 ctttaatctgattgagccgtgccaatatcat 89