miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 87.7 bits (44), Expect = 3e-17
Identities = 74/84 (88%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 18 tttgatgttggcttgtctcaatcaaatcaaagttcttgaa-----atttgagttctttag 72
||||||||||||| | ||||||||||||||||||||| || |||||||| ||||||
Sbjct: 8 tttgatgttggctaggctcaatcaaatcaaagttcttaaatagagatttgagtactttag 67
Query: 73 tctgattgagtcgtgccaatatca 96
|||||||||| |||||||||||||
Sbjct: 68 tctgattgagccgtgccaatatca 91
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 54.0 bits (27), Expect = 4e-07
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 60 ttgagttcttt-agtctgattgagtcgtgccaatatcat 97
||||||||||| |||||||||||| ||||||||||||||
Sbjct: 67 ttgagttcttttagtctgattgagccgtgccaatatcat 105
>RF00643;MIR171_1;AASG02007113.1/1812-1912 3988:Ricinus communis
(castor bean)
Length = 101
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 61 tgagttctttagtctgattgagtcgtgccaatatc 95
||||||||||| |||||||||| ||||||||||||
Sbjct: 55 tgagttctttaatctgattgagccgtgccaatatc 89
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 60 ttgagttctttagtctgattgagtcgtgccaatatcat 97
|||||| ||||| |||||||||| ||||||||||||||
Sbjct: 50 ttgagtcctttaatctgattgagccgtgccaatatcat 87
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ctttagtctgattgagtcgtgccaatatcat 97
||||| |||||||||| ||||||||||||||
Sbjct: 59 ctttaatctgattgagccgtgccaatatcat 89