miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
           (barrel medic)
          Length = 117

 Score =  208 bits (105), Expect = 1e-53
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgagatattggcctggttcactcagaccaagtgataaaccactaagatacagtattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   aatgagatattggcctggttcactcagaccaagtgataaaccactaagatacagtattgt 65

                                                        
Query: 61  acttgtgtggttttgggtttgattgagccgtgccaatatctcact 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  acttgtgtggttttgggtttgattgagccgtgccaatatctcact 110




>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
          Length = 114

 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 70  gttttgggtttgattgagccgtgccaatatctcact 105
           ||||||| ||||||||||||||||||||||||||||
Sbjct: 72  gttttggttttgattgagccgtgccaatatctcact 107




>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
          Length = 144

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 72  tttgggtttgattgagccgtgccaatatctcact 105
           |||| |||||||||||||||||||||||||||||
Sbjct: 104 tttgtgtttgattgagccgtgccaatatctcact 137



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 6  gatattggcctggttcactcagac 29
          ||||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcagac 34




>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
          Length = 114

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 77  gtttgattgagccgtgccaatatctca 103
           |||||||||||||||||||||||||||
Sbjct: 79  gtttgattgagccgtgccaatatctca 105



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 6  gatattggcctggttcactcagac 29
          ||||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcagac 34




>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
           (papaya)
          Length = 143

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 78  tttgattgagccgtgccaatatctca 103
           ||||||||||||||||||||||||||
Sbjct: 109 tttgattgagccgtgccaatatctca 134



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 6  gatattggcctggttcactcagac 29
          ||||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcagac 34




>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
           (castor bean)
          Length = 125

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 78  tttgattgagccgtgccaatatctca 103
           ||||||||||||||||||||||||||
Sbjct: 91  tttgattgagccgtgccaatatctca 116



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 6  gatattggcctggttcactcagac 29
          ||||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcagac 34




>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
          Length = 134

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 78  tttgattgagccgtgccaatatctca 103
           ||||||||||||||||||||||||||
Sbjct: 100 tttgattgagccgtgccaatatctca 125




>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
          Length = 112

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 78  tttgattgagccgtgccaatatctc 102
           |||||||||||||||||||||||||
Sbjct: 88  tttgattgagccgtgccaatatctc 112



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  gatattggcctggttcactcaga 28
          |||||||||||||||||||||||
Sbjct: 1  gatattggcctggttcactcaga 23




>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
           (papaya)
          Length = 99

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 77  gtttgattgagccgtgccaatatc 100
           ||||||||||||||||||||||||
Sbjct: 64  gtttgattgagccgtgccaatatc 87




>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
          Length = 82

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 77  gtttgattgagccgtgccaatatc 100
           ||||||||||||||||||||||||
Sbjct: 57  gtttgattgagccgtgccaatatc 80




>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
           (castor bean)
          Length = 138

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 78  tttgattgagccgtgccaatatct 101
           ||||||||||||||||||||||||
Sbjct: 104 tttgattgagccgtgccaatatct 127




>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
           (castor bean)
          Length = 99

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 77  gtttgattgagccgtgccaatatc 100
           ||||||||||||||||||||||||
Sbjct: 64  gtttgattgagccgtgccaatatc 87




>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
          Length = 118

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 78  tttgattgagccgtgccaatatct 101
           ||||||||||||||||||||||||
Sbjct: 84  tttgattgagccgtgccaatatct 107




>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
          Length = 98

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 77  gtttgattgagccgtgccaatatc 100
           ||||||||||||||||||||||||
Sbjct: 63  gtttgattgagccgtgccaatatc 86




>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
          Length = 104

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 80  tgattgagccgtgccaatatctca 103
           ||||||||||||||||||||||||
Sbjct: 72  tgattgagccgtgccaatatctca 95




>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
          Length = 104

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 80  tgattgagccgtgccaatatctca 103
           ||||||||||||||||||||||||
Sbjct: 72  tgattgagccgtgccaatatctca 95




>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
           (sorghum)
          Length = 137

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 80  tgattgagccgtgccaatatctca 103
           ||||||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatctca 128




>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
           (sorghum)
          Length = 144

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 77  gtttgattgagccgtgccaatatc 100
           ||||||||||||||||||||||||
Sbjct: 109 gtttgattgagccgtgccaatatc 132




>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
           Indica Group
          Length = 137

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 80  tgattgagccgtgccaatatctca 103
           ||||||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatctca 128




>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
           (papaya)
          Length = 104

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  tttgattgagccgtgccaatatc 100
           |||||||||||||||||||||||
Sbjct: 70  tttgattgagccgtgccaatatc 92




>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
           (papaya)
          Length = 100

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  tttgattgagccgtgccaatatc 100
           |||||||||||||||||||||||
Sbjct: 66  tttgattgagccgtgccaatatc 88




>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa
          subsp. pekinensis
          Length = 109

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  gatattggcctggttcactcaga 28
          |||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33




>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
           (thale cress)
          Length = 101

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  tttgattgagccgtgccaatatc 100
           |||||||||||||||||||||||
Sbjct: 67  tttgattgagccgtgccaatatc 89




>RF00643;MIR171_1;EU549081.1/305-220 3702:Arabidopsis thaliana
          (thale cress)
          Length = 86

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  gatattggcctggttcactcaga 28
          |||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33




>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
          (thale cress)
          Length = 114

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 6  gatattggcctggttcactcaga 28
          |||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33




>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
           (castor bean)
          Length = 100

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  tttgattgagccgtgccaatatc 100
           |||||||||||||||||||||||
Sbjct: 66  tttgattgagccgtgccaatatc 88




>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago truncatula
           (barrel medic)
          Length = 104

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  tttgattgagccgtgccaatatc 100
           |||||||||||||||||||||||
Sbjct: 70  tttgattgagccgtgccaatatc 92




>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
          Length = 100

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  tttgattgagccgtgccaatatc 100
           |||||||||||||||||||||||
Sbjct: 66  tttgattgagccgtgccaatatc 88




>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
          Length = 102

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  tttgattgagccgtgccaatatc 100
           |||||||||||||||||||||||
Sbjct: 68  tttgattgagccgtgccaatatc 90




>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
          Length = 101

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  tttgattgagccgtgccaatatc 100
           |||||||||||||||||||||||
Sbjct: 67  tttgattgagccgtgccaatatc 89




>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum bicolor
           (sorghum)
          Length = 101

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  tttgattgagccgtgccaatatc 100
           |||||||||||||||||||||||
Sbjct: 67  tttgattgagccgtgccaatatc 89




>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
          Length = 102

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  tttgattgagccgtgccaatatc 100
           |||||||||||||||||||||||
Sbjct: 68  tttgattgagccgtgccaatatc 90




>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa Japonica
           Group
          Length = 101

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  tttgattgagccgtgccaatatc 100
           |||||||||||||||||||||||
Sbjct: 67  tttgattgagccgtgccaatatc 89




>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
           trichocarpa
          Length = 133

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 80  tgattgagccgtgccaatatct 101
           ||||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatatct 122




>RF00643;MIR171_1;CR962130.3/48254-48370 3880:Medicago truncatula
          (barrel medic)
          Length = 117

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 3  tgagatattggcctggttcactcaga 28
          |||||||||||| |||||||||||||
Sbjct: 8  tgagatattggcttggttcactcaga 33



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 78  tttgattgagccgtgccaatat 99
           ||||||||||||||||||||||
Sbjct: 83  tttgattgagccgtgccaatat 104




>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
          Length = 134

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 79  ttgattgagccgtgccaatatc 100
           ||||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatatc 122




>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
          Length = 135

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 79  ttgattgagccgtgccaatatc 100
           ||||||||||||||||||||||
Sbjct: 102 ttgattgagccgtgccaatatc 123




>RF00643;MIR171_1;ABXC01000488.1/1154-1044 4558:Sorghum bicolor
           (sorghum)
          Length = 111

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 80  tgattgagccgtgccaatatct 101
           ||||||||||||||||||||||
Sbjct: 79  tgattgagccgtgccaatatct 100




>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
          Length = 136

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 80  tgattgagccgtgccaatatct 101
           ||||||||||||||||||||||
Sbjct: 104 tgattgagccgtgccaatatct 125




>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
           Indica Group
          Length = 121

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 80  tgattgagccgtgccaatatct 101
           ||||||||||||||||||||||
Sbjct: 89  tgattgagccgtgccaatatct 110




>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
           Japonica Group
          Length = 121

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 80  tgattgagccgtgccaatatct 101
           ||||||||||||||||||||||
Sbjct: 89  tgattgagccgtgccaatatct 110