miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 184 bits (93), Expect = 1e-46
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 aaagcgatgttggtgaggttcaatccgaagacggatttacatgtatagagttgtaaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 aaagcgatgttggtgaggttcaatccgaagacggatttacatgtatagagttgtaaaata 65
Query: 61 cgatctcagattgagccgcgccaatatcacttt 93
|||||||||||||||||||||||||||||||||
Sbjct: 66 cgatctcagattgagccgcgccaatatcacttt 98
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 115 bits (58), Expect = 1e-25
Identities = 85/93 (91%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 aaagcgatgttggtgaggttcaatccgaagacggatttacatgtatagagttgtaaaata 60
||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct: 6 aaagcgatgttggtgaggttcaatccgaagacggatttaca--cattctgttgtaaagga 63
Query: 61 cgatctcagattgagccgcgccaatatcacttt 93
|||||||||||||||||||||||||||||||||
Sbjct: 64 cgatctcagattgagccgcgccaatatcacttt 96
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 93.7 bits (47), Expect = 4e-19
Identities = 80/90 (88%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 3 agcgatgttggtgaggttcaatccgaagacggatttacatgtatagagttgtaaaatacg 62
|||||||||||||||||||||||||||||| |||||||| | | | ||||||| ||
Sbjct: 1 agcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaa--gtaaaatccg 58
Query: 63 atctcagattgagccgcgccaatatcactt 92
||||||||||||||||||||||||||||||
Sbjct: 59 atctcagattgagccgcgccaatatcactt 88
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 93.7 bits (47), Expect = 4e-19
Identities = 81/92 (88%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 2 aagcgatgttggtgaggttcaatccgaagacggatttacatgtatagagttgtaaaatac 61
||||||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacggatttac----gaagagccgtaaagaac 62
Query: 62 gatctcagattgagccgcgccaatatcacttt 93
|||||| |||||||||||||||||||||||||
Sbjct: 63 gatctctgattgagccgcgccaatatcacttt 94
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 87.7 bits (44), Expect = 2e-17
Identities = 80/91 (87%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 2 aagcgatgttggtgaggttcaatccgaagacggatttacatgtatagagttgtaaaatac 61
|||||||||||||||||||||||||||||||| |||| ||| || | ||||| ||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacgaattt--atgcttattttcgtaaagaac 64
Query: 62 gatctcagattgagccgcgccaatatcactt 92
|||||||||||||||||||||||||||||||
Sbjct: 65 gatctcagattgagccgcgccaatatcactt 95
>RF00643;MIR171_1;ABIM01011221.1/13564-13667 3649:Carica papaya
(papaya)
Length = 104
Score = 77.8 bits (39), Expect = 2e-14
Identities = 82/94 (87%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 1 aaagcgatgttggtgaggttcaatccgaagacggatttacatg-tatagagttgtaaaat 59
||||||||||||||||||||||||| |||||| |||||||||| || |||| |||
Sbjct: 6 aaagcgatgttggtgaggttcaatctgaagacagatttacatgagatgcgattgt--aat 63
Query: 60 acgatctcagattgagccgcgccaatatcacttt 93
|||||||||| ||||||||||||||||||||||
Sbjct: 64 tcgatctcagaatgagccgcgccaatatcacttt 97
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 62 gatctcagattgagccgcgccaatatcacttt 93
||||||||||||||||||||||||||||||||
Sbjct: 63 gatctcagattgagccgcgccaatatcacttt 94
>RF00643;MIR171_1;ABEU01001861.1/185639-185542
145481:Physcomitrella patens subsp. patens
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 65 ctcagattgagccgcgccaatatcac 90
||||||||||||||||||||||||||
Sbjct: 63 ctcagattgagccgcgccaatatcac 88
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 tcagattgagccgcgccaatatcac 90
|||||||||||||||||||||||||
Sbjct: 63 tcagattgagccgcgccaatatcac 87
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 gattgagccgcgccaatatcactt 92
||||||||||||||||||||||||
Sbjct: 88 gattgagccgcgccaatatcactt 111
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gattgagccgcgccaatatcac 90
||||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatcac 92
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gattgagccgcgccaatatcac 90
||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcac 91
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 agcgatgttggtgaggttcaatccga 28
|||||| |||||||||||||||||||
Sbjct: 8 agcgatattggtgaggttcaatccga 33
