miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 379 bits (191), Expect = e-104
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 10 aatagatgaagagagcttccttcagtccactcatggaagggtaaggggtttgaattacct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatagatgaagagagcttccttcagtccactcatggaagggtaaggggtttgaattacct 60
Query: 70 gctgactcattgattcaaacacaatagacaattatggggttatgctattgtgaatgtgtg 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgactcattgattcaaacacaatagacaattatggggttatgctattgtgaatgtgtg 120
Query: 130 aatgatgcaggaggtgaatttcttccttttcttctttgcttggactgaagggagctccct 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatgatgcaggaggtgaatttcttccttttcttctttgcttggactgaagggagctccct 180
Query: 190 ttttctattta 200
|||||||||||
Sbjct: 181 ttttctattta 191
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 147 bits (74), Expect = 7e-35
Identities = 155/178 (87%), Gaps = 8/178 (4%)
Strand = Plus / Plus
Query: 18 aagagagcttccttcagtccactcatggaagggtaaggggtttgaattacctgctgactc 77
||||||||||||||||||||||||||||| |||| ||||||||| |||| |||| |||||
Sbjct: 9 aagagagcttccttcagtccactcatggatgggttaggggtttggattagctgccgactc 68
Query: 78 attgattcaaacacaatagacaat---tatggggttatgctattgtgaatgtgtgaatga 134
||| ||||||||||| ||| ||| |||| ||| | ||| |||||||||||||||||
Sbjct: 69 attcattcaaacacagtag--aatggaaatggagtt-tactactgtgaatgtgtgaatga 125
Query: 135 tgcaggaggtgaatttcttccttttct--tctttgcttggactgaagggagctccctt 190
||| |||||| |||||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct: 126 tgcgggaggtaaatttcatccttttcttgtctgtgcttggactgaagggagctccctt 183
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 121 bits (61), Expect = 4e-27
Identities = 149/175 (85%), Gaps = 5/175 (2%)
Strand = Plus / Plus
Query: 22 gagcttccttcagtccactcatggaagggtaaggggtttgaattacctgctgactcattg 81
||||||||||||||||||||||||| ||| | ||||||| |||| |||| ||||||||
Sbjct: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
Query: 82 attcaaacacaatagacaatta-tgg--ggttatgctattgtgaatgtgtgaatgatgca 138
||||||||||| ||||||| | ||| | ||||||||||||||||||||||| ||
Sbjct: 61 attcaaacacagtagacaaggagtggcagcggctgctattgtgaatgtgtgaatgacgcg 120
Query: 139 ggaggtgaatttcttccttttct--tctttgcttggactgaagggagctcccttt 191
|||| | |||||| ||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 121 ggagattaatttcatccttttcttctctgtgcttggactgaagggagctcccttt 175
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 105 bits (53), Expect = 2e-22
Identities = 153/182 (84%), Gaps = 7/182 (3%)
Strand = Plus / Plus
Query: 18 aagagagcttccttcagtccactcatggaagggtaaggggtttgaattacctgctgactc 77
||||||||| |||||||||||||||||| || || || ||||||||| ||||||||||
Sbjct: 9 aagagagctctcttcagtccactcatggataggaaaaggttttgaattagctgctgactc 68
Query: 78 attgattcaaacacaatag--acaattatggggt-tatgctat--tgtgaatgtgtgaat 132
||| |||||||||||||| | || ||| | |||||||| |||||||||||||||
Sbjct: 69 attcattcaaacacaataagaagaagcatgatgaatatgctatattgtgaatgtgtgaat 128
Query: 133 gatgcaggaggtgaatttcttccttttctt--ctttgcttggactgaagggagctccctt 190
||||| |||| | |||||| || || |||| ||||||||||||||||||||||||||||
Sbjct: 129 gatgcgggagctaaatttcatctttctcttgtctttgcttggactgaagggagctccctt 188
Query: 191 tt 192
||
Sbjct: 189 tt 190
>RF00638;MIR159;BABK01063850.1/1-151 34305:Lotus japonicus
Length = 151
Score = 87.7 bits (44), Expect = 6e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 30 ttcagtccactcatggaagggtaaggggtttgaattacctgctgactcattgattcaaac 89
||||||||||| ||||| ||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct: 1 ttcagtccacttatggatgggtaagggatttgaattagctgctgactcattcattcaaac 60
Query: 90 acaataga 97
|| |||||
Sbjct: 61 acgataga 68
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 85.7 bits (43), Expect = 2e-16
Identities = 73/82 (89%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 112 tgctattgtgaatgtgtgaatgatgcaggaggtgaatttcttccttttct--tctttgct 169
|||||||||||||||||||||||||| |||| | |||||| | ||| ||| ||| ||||
Sbjct: 110 tgctattgtgaatgtgtgaatgatgcgggagataaatttcatacttctcttctctgtgct 169
Query: 170 tggactgaagggagctcccttt 191
||||||||||||||||||||||
Sbjct: 170 tggactgaagggagctcccttt 191
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 69.9 bits (35), Expect = 1e-11
Identities = 146/180 (81%), Gaps = 11/180 (6%)
Strand = Plus / Plus
Query: 22 gagcttccttcagtccactcatggaagggtaaggggtttgaattacctgctgactcattg 81
||||||||| ||||||||||||||| | || | ||||||| |||| |||| ||||||||
Sbjct: 13 gagcttcctccagtccactcatggatgagttaagggtttggattagctgccgactcattc 72
Query: 82 attcaaacacaatagacaattatgggg-------ttatgctattgtgaatgtgtgaatga 134
||||| ||||| |||| ||||| ||| || | || |||||||||||||||||
Sbjct: 73 attcagacacagtaga-aattaagggaccggatcttttactgctgtgaatgtgtgaatga 131
Query: 135 tgcaggaggtgaatttcttccttttctt--ctttgcttggactgaagggagctccctttt 192
||| |||| | |||||| || | ||||| || |||||||||||||||||||||||||||
Sbjct: 132 tgcgggagat-aatttcatcttcttcttgtctgtgcttggactgaagggagctccctttt 190
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 60.0 bits (30), Expect = 1e-08
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 19 agagagcttccttcagtccactcatgga-agggtaaggggtttgaattacctgctgactc 77
|||||||||||||||| ||||||||||| ||| || ||| |||||||| |||| |||||
Sbjct: 10 agagagcttccttcagcccactcatggataggagaaaggggttgaattagctgccgactc 69
Query: 78 attgattcaa 87
||| ||||||
Sbjct: 70 attcattcaa 79
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 161 ttctttgcttggactgaagggagctcc 187
|||| ||||||||||||||||||||||
Sbjct: 165 ttctgtgcttggactgaagggagctcc 191
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya
(papaya)
Length = 192
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 agagagcttccttcagtccactcatggaagggta 52
|||||||||||||||| ||||||||||| |||||
Sbjct: 10 agagagcttccttcagcccactcatggatgggta 43
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 166 tgcttggactgaagggagctcc 187
||||||||||||||||||||||
Sbjct: 158 tgcttggactgaagggagctcc 179
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 162 tctttgcttggactgaagggagctcccttt 191
|||||| |||||||||||||||||||||||
Sbjct: 156 tctttgattggactgaagggagctcccttt 185
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 16 tgaagagagcttccttcagtccactcatgg 45
|||||||||||| |||||||||||||||||
Sbjct: 7 tgaagagagctttcttcagtccactcatgg 36
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 166 tgcttggactgaagggagctccctt 190
|||||||||||||||||||||||||
Sbjct: 149 tgcttggactgaagggagctccctt 173
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 168 cttggactgaagggagctccctttt 192
|||||||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctccctttt 186
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 gaagagagcttccttcagtccactcatgg 45
||||||||| |||||||||||||||||||
Sbjct: 8 gaagagagcgtccttcagtccactcatgg 36
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 162 tctttgcttggactgaagggagctccct 189
|||||||||||||||||||| |||||||
Sbjct: 160 tctttgcttggactgaagggtgctccct 187
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 166 tgcttggactgaagggagctccct 189
||||||||||||||||||||||||
Sbjct: 158 tgcttggactgaagggagctccct 181
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 17 gaagagagcttccttcagtccactcatgga 46
||||||||||| |||| |||||||||||||
Sbjct: 8 gaagagagctttcttcggtccactcatgga 37
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 162 tctttgcttggactgaagggagctccct 189
|||||| |||||||||||||||||||||
Sbjct: 154 tctttgattggactgaagggagctccct 181
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 18 aagagagcttccttcagtccactcatgg 45
|||||||||| |||||||||||||||||
Sbjct: 8 aagagagctttcttcagtccactcatgg 35
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 168 cttggactgaagggagctcccttt 191
||||||||||||||||||||||||
Sbjct: 158 cttggactgaagggagctcccttt 181
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 agagagcttccttcagtccactcatgga 46
|||||||||||||||| |||||||||||
Sbjct: 10 agagagcttccttcagcccactcatgga 37
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 166 tgcttggactgaagggagctccctttttcta 196
|||||||||||||||||||||| | ||||||
Sbjct: 169 tgcttggactgaagggagctccttctttcta 199
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 18 aagagagcttccttcagtccactcatgg 45
|||||||||| |||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgg 36
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 168 cttggactgaagggagctcccttt 191
||||||||||||||||||||||||
Sbjct: 191 cttggactgaagggagctcccttt 214
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 162 tctttgcttggactgaagggagctccct 189
|||||||||||||||||||| |||||||
Sbjct: 157 tctttgcttggactgaagggtgctccct 184
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 gaagagagcttccttcagtccactca 42
||||||||| ||||||||||||||||
Sbjct: 8 gaagagagcgtccttcagtccactca 33
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 162 tctttgcttggactgaagggagctccct 189
|||||||||||||||||||| |||||||
Sbjct: 161 tctttgcttggactgaagggtgctccct 188
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 gaagagagcttccttcagtccactca 42
||||||||| ||||||||||||||||
Sbjct: 8 gaagagagcgtccttcagtccactca 33
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 169 ttggactgaagggagctcccttt 191
|||||||||||||||||||||||
Sbjct: 157 ttggactgaagggagctcccttt 179
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 161 ttctttgcttggactgaagggagctcc 187
|||| ||||||||||||||||||||||
Sbjct: 167 ttctgtgcttggactgaagggagctcc 193
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 168 cttggactgaagggagctccctt 190
|||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccctt 185
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 168 cttggactgaagggagctccct 189
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 168 cttggactgaagggagctccct 189
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
