miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 357 bits (180), Expect = 3e-98
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 1 taagagagctttctttagtccactcatgggtgacaataagatttcaattagctgctgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taagagagctttctttagtccactcatgggtgacaataagatttcaattagctgctgact 67
Query: 61 cattcatccaaatgttgagtaaaatatatagaaacatatactcatcaaatgagtgaatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cattcatccaaatgttgagtaaaatatatagaaacatatactcatcaaatgagtgaatga 127
Query: 121 tgcgggagacaaattgaatcttaagtttcctatacttggactgaagggagctcccttttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tgcgggagacaaattgaatcttaagtttcctatacttggactgaagggagctcccttttc 187
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 131 bits (66), Expect = 4e-30
Identities = 153/178 (85%), Gaps = 3/178 (1%)
Strand = Plus / Plus
Query: 1 taagagagctttctttagtccactcatgggtgacaataagatttcaattagctgctgact 60
||||||||||||||| |||||||||||||||| | || ||||| |||||||||| ||||
Sbjct: 7 taagagagctttcttcagtccactcatgggtggtagtaggattt-aattagctgccgact 65
Query: 61 cattcatccaaatgttgagtaaaatatatagaaacatatactcatcaaatgagtgaatga 120
||||||||||||| ||||| ||| || | || ||| || ||||||||||||||
Sbjct: 66 cattcatccaaatactgagttaaaggacaaggag-at-tacccagtaaatgagtgaatga 123
Query: 121 tgcgggagacaaattgaatcttaagtttcctatacttggactgaagggagctcccttt 178
|||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct: 124 tgcgggagacaaattgaatcctaagcttcctgtacttggactgaagggagctcccttt 181
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 127 bits (64), Expect = 6e-29
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 107 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 166
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 143 aaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactgaag 202
Query: 167 ggagctcccttt 178
||||||||||||
Sbjct: 203 ggagctcccttt 214
Score = 81.8 bits (41), Expect = 3e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 taagagagctttctttagtccactcatgggtgacaataagatttcaattagctgctgact 60
||||||||||||||| |||||||||||||||| | || ||||| |||||||||| ||||
Sbjct: 8 taagagagctttcttcagtccactcatgggtggcggtaggattt-aattagctgccgact 66
Query: 61 cattcatccaaat 73
|||||||||||||
Sbjct: 67 cattcatccaaat 79
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 99.6 bits (50), Expect = 1e-20
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 107 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 166
|||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||
Sbjct: 98 aaatgagtgaatgatgcgggagacaaattgtatcttaagcttcctgttattggactgaag 157
Query: 167 ggagctccct 176
||||||||||
Sbjct: 158 ggagctccct 167
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 93.7 bits (47), Expect = 8e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 107 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 166
|||||| ||||||||||||||||||||||| |||||||| | ||| | ||||||||||||
Sbjct: 103 aaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactgaag 162
Query: 167 ggagctccctt 177
|||||||||||
Sbjct: 163 ggagctccctt 173
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 87.7 bits (44), Expect = 5e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 107 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 166
|||||| ||| |||||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct: 108 aaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaag 167
Query: 167 ggagctcccttt 178
||||||||||||
Sbjct: 168 ggagctcccttt 179
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 75.8 bits (38), Expect = 2e-13
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 107 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 166
|||||| ||||||||||| |||||||||||| |||| | || |||| ||||||||||||
Sbjct: 112 aaatgaatgaatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaag 171
Query: 167 ggagctccct 176
||||||||||
Sbjct: 172 ggagctccct 181
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 69.9 bits (35), Expect = 1e-11
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 101 ctcatcaaatgagtgaatgatgcgggag-acaaattgaatcttaagtttcctatacttgg 159
|||| ||| ||||||||||| ||||||| |||| |||| |||| || ||||| |||||||
Sbjct: 95 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 154
Query: 160 actgaagggagctcc 174
|||||||||||||||
Sbjct: 155 actgaagggagctcc 169
Score = 67.9 bits (34), Expect = 5e-11
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 6 gagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactcattc 65
|||||||||||||||||| |||||| || || || ||||||| ||||| |||||||||
Sbjct: 1 gagctttctttagtccacacatggggaacgat-agggttcaatttgctgccgactcattc 59
Query: 66 atccaaatgttgag 79
||||||||||||||
Sbjct: 60 atccaaatgttgag 73
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 54.0 bits (27), Expect = 7e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 2 aagagagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactc 61
||||||||| |||| ||||||||||||| | || | | ||| ||||||||||||||||
Sbjct: 9 aagagagctctcttcagtccactcatggataggaaaaggttttgaattagctgctgactc 68
Query: 62 attcatccaaa 72
|||||| ||||
Sbjct: 69 attcattcaaa 79
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 155 cttggactgaagggagctccctttt 179
|||||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccctttt 190
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 155 cttggactgaagggagctccctttt 179
|||||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccctttt 190
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 155 cttggactgaagggagctccctttt 179
|||||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccctttt 183
>RF00638;MIR159;BABK01063850.1/1-151 34305:Lotus japonicus
Length = 151
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 40 gatttcaattagctgctgactcattcatccaaa 72
||||| |||||||||||||||||||||| ||||
Sbjct: 27 gatttgaattagctgctgactcattcattcaaa 59
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 48.1 bits (24), Expect = 4e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 107 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 166
|||||| |||||||||||| |||||||||| ||| | || || | |||||||||||
Sbjct: 114 aaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaag 173
Query: 167 ggagctcccttt 178
||||||||||||
Sbjct: 174 ggagctcccttt 185
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 97 tatactcatcaaatgagtgaatgatgcgggagacaaattg 136
||||||| | |||||| |||||||||||| ||||||||||
Sbjct: 102 tatactcgttaaatgaatgaatgatgcggtagacaaattg 141
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 155 cttggactgaagggagctcccttt 178
||||||||||||||||||||||||
Sbjct: 152 cttggactgaagggagctcccttt 175
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 155 cttggactgaagggagctcccttt 178
||||||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctcccttt 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 taagagagctttctttagtccactcatggg 30
|||||||||| |||| ||||||||||||||
Sbjct: 8 taagagagctctcttcagtccactcatggg 37
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 43 ttcaattagctgctgactcattcatccaaat 73
||||||||||| | |||||||||||||||||
Sbjct: 49 ttcaattagcttccgactcattcatccaaat 79
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 107 aaatgagtgaatgatgcgggagacaaattg 136
|||||| |||||||||||| ||||||||||
Sbjct: 112 aaatgaatgaatgatgcggtagacaaattg 141
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 155 cttggactgaagggagctccctt 177
|||||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctccctt 183
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 155 cttggactgaagggagctccctt 177
|||||||||||||||||||||||
Sbjct: 163 cttggactgaagggagctccctt 185
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 155 cttggactgaagggagctccct 176
||||||||||||||||||||||
Sbjct: 199 cttggactgaagggagctccct 220
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 155 cttggactgaagggagctccct 176
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
