miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 157 bits (79), Expect = 3e-38
Identities = 93/100 (93%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccatagaatgtcttcnnnnnnnggttccattttatt 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccatagaatgtcttctttttttggttccattttatt 69
Query: 61 gattgatcttctcttgcgctatccatcctgagtttcatgg 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gattgatcttctcttgcgctatccatcctgagtttcatgg 109
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 75.8 bits (38), Expect = 9e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 63 ttgatcttctcttgcgctatccatcctgagtttcatgg 100
||||||||||||||||||||||||||||||||||||||
Sbjct: 58 ttgatcttctcttgcgctatccatcctgagtttcatgg 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccat 37
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccat 37
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 63 ttgatcttctcttgcgctatccatcctgagtttca 97
||||||||| ||||||||||||||||||||||||
Sbjct: 53 ttgatcttcatttgcgctatccatcctgagtttca 87
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccat 37
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccat 37
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccat 37
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcca 27
|||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcca 36
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 ttgcgctatccatcctgagtttcat 98
|||||||||||||||||||||||||
Sbjct: 90 ttgcgctatccatcctgagtttcat 114
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcc 35
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgcc 35
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttca 97
||||||||||||||||||||||
Sbjct: 91 gcgctatccatcctgagtttca 112
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccat 37
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccat 37
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccat 37
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccat 37
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 66 gcgctatccatcctgagtttcat 88
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccat 28
||||||||||||||||||||||||
Sbjct: 14 taagctcaggagggatagcgccat 37
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 67 tcttctcttgcgctatccatcctgagtttcat 98
|||||| | |||||||||||||||||||||||
Sbjct: 96 tcttctatagcgctatccatcctgagtttcat 127
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccat 28
|||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37
