miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
           (barrel medic)
          Length = 116

 Score =  145 bits (73), Expect = 1e-34
 Identities = 92/97 (94%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaatatctatttggtctaatatccattagaaaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaatatgtatttggtctaatatccattagaaaa 70

                                                
Query: 61  gatagtcttttcttctatgaagtgtttgggggaactc 97
           |||||| | ||| || |||||||||||||||||||||
Sbjct: 71  gatagt-tcttcatcaatgaagtgtttgggggaactc 106




>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
           (barrel medic)
          Length = 115

 Score =  129 bits (65), Expect = 7e-30
 Identities = 91/97 (93%), Gaps = 2/97 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaatatctatttggtctaatatccattagaaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaatatctatttggtctaaaatccattagaaaa 70

                                                
Query: 61  gatagtcttttcttctatgaagtgtttgggggaactc 97
            ||||| | |||||  |||||||||||||||||||||
Sbjct: 71  -atagt-tcttcttaaatgaagtgtttgggggaactc 105




>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
           (barrel medic)
          Length = 121

 Score =  119 bits (60), Expect = 7e-27
 Identities = 91/101 (90%), Gaps = 4/101 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaatatc----tatttggtctaatatccattag 56
           ||||||||||||||||||||||||||||||||||    ||||||||||||  ||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 70

                                                    
Query: 57  aaaagatagtcttttcttctatgaagtgtttgggggaactc 97
           ||||||||| | ||| ||| |||||||||||||||||||||
Sbjct: 71  aaaagatagccattttttcaatgaagtgtttgggggaactc 111




>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
           (barrel medic)
          Length = 120

 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 89/101 (88%), Gaps = 5/101 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaa----tatctatttggtctaatatccattag 56
           ||||||||||||||||||||||||||||||    |||||||||||| ||| |||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatccattag 70

                                                    
Query: 57  aaaagatagtcttttcttctatgaagtgtttgggggaactc 97
            | ||||||| | |||||  |||||||||||||||||||||
Sbjct: 71  gatagatagt-tcttcttaaatgaagtgtttgggggaactc 110




>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
          Length = 114

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                            
Query: 49  tccattagaaaagatagtcttttcttctatgaagtgtttgggggaactc 97
           ||||||||||| ||||| | | ||||| |||||||||||||||||||||
Sbjct: 56  tccattagaaatgatagccatgtcttcaatgaagtgtttgggggaactc 104




>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
          (sorghum)
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 76 tatgaagtgtttgggggaactc 97
          ||||||||||||||||||||||
Sbjct: 72 tatgaagtgtttgggggaactc 93