miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 145 bits (73), Expect = 1e-34
Identities = 92/97 (94%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaatatctatttggtctaatatccattagaaaa 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatgtatttggtctaatatccattagaaaa 70
Query: 61 gatagtcttttcttctatgaagtgtttgggggaactc 97
|||||| | ||| || |||||||||||||||||||||
Sbjct: 71 gatagt-tcttcatcaatgaagtgtttgggggaactc 106
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 129 bits (65), Expect = 7e-30
Identities = 91/97 (93%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaatatctatttggtctaatatccattagaaaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatctatttggtctaaaatccattagaaaa 70
Query: 61 gatagtcttttcttctatgaagtgtttgggggaactc 97
||||| | ||||| |||||||||||||||||||||
Sbjct: 71 -atagt-tcttcttaaatgaagtgtttgggggaactc 105
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 119 bits (60), Expect = 7e-27
Identities = 91/101 (90%), Gaps = 4/101 (3%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaatatc----tatttggtctaatatccattag 56
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 70
Query: 57 aaaagatagtcttttcttctatgaagtgtttgggggaactc 97
||||||||| | ||| ||| |||||||||||||||||||||
Sbjct: 71 aaaagatagccattttttcaatgaagtgtttgggggaactc 111
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 95.6 bits (48), Expect = 1e-19
Identities = 89/101 (88%), Gaps = 5/101 (4%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaa----tatctatttggtctaatatccattag 56
|||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatccattag 70
Query: 57 aaaagatagtcttttcttctatgaagtgtttgggggaactc 97
| ||||||| | ||||| |||||||||||||||||||||
Sbjct: 71 gatagatagt-tcttcttaaatgaagtgtttgggggaactc 110
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 58.0 bits (29), Expect = 2e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 49 tccattagaaaagatagtcttttcttctatgaagtgtttgggggaactc 97
||||||||||| ||||| | | ||||| |||||||||||||||||||||
Sbjct: 56 tccattagaaatgatagccatgtcttcaatgaagtgtttgggggaactc 104
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tatgaagtgtttgggggaactc 97
||||||||||||||||||||||
Sbjct: 72 tatgaagtgtttgggggaactc 93