miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 188 bits (95), Expect = 9e-48
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaatatctatttggtctaaaatccattagaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatctatttggtctaaaatccattagaaaa 70
Query: 61 atagttcttcttaaatgaagtgtttgggggaactc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 71 atagttcttcttaaatgaagtgtttgggggaactc 105
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 143 bits (72), Expect = 5e-34
Identities = 91/96 (94%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaatatctatttggtctaaaatccattagaaaa 60
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatgtatttggtctaatatccattagaaaa 70
Query: 61 -atagttcttcttaaatgaagtgtttgggggaactc 95
|||||||||| | ||||||||||||||||||||||
Sbjct: 71 gatagttcttcatcaatgaagtgtttgggggaactc 106
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 125 bits (63), Expect = 1e-28
Identities = 92/100 (92%), Gaps = 5/100 (5%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaa----tatctatttggtctaaaatccatta- 55
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatccattag 70
Query: 56 gaaaaatagttcttcttaaatgaagtgtttgggggaactc 95
|| | |||||||||||||||||||||||||||||||||||
Sbjct: 71 gatagatagttcttcttaaatgaagtgtttgggggaactc 110
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 87.7 bits (44), Expect = 2e-17
Identities = 89/101 (88%), Gaps = 6/101 (5%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaa----tatctatttggtctaaaatccattag 56
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 70
Query: 57 aaaa-atag-ttcttcttaaatgaagtgtttgggggaactc 95
|||| |||| || || ||||||||||||||||||||||
Sbjct: 71 aaaagatagccattttttcaatgaagtgtttgggggaactc 111
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 61 atagttcttcttaaatgaagtgtttgggggaactc 95
||||||||| || ||||||||||||||||||||||
Sbjct: 52 atagttcttgttcaatgaagtgtttgggggaactc 86
>RF00451;mir-395;AC149601.3/55942-55838 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 61 atagttcttcttaaatgaagtgtttgggggaactc 95
||||||||| || |||||||| |||||||||||||
Sbjct: 61 atagttcttgttcaatgaagtatttgggggaactc 95
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 tcttaaatgaagtgtttgggggaactc 95
|||| ||||||||||||||||||||||
Sbjct: 78 tcttcaatgaagtgtttgggggaactc 104