miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
           (barrel medic)
          Length = 115

 Score =  188 bits (95), Expect = 9e-48
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaatatctatttggtctaaaatccattagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaatatctatttggtctaaaatccattagaaaa 70

                                              
Query: 61  atagttcttcttaaatgaagtgtttgggggaactc 95
           |||||||||||||||||||||||||||||||||||
Sbjct: 71  atagttcttcttaaatgaagtgtttgggggaactc 105




>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
           (barrel medic)
          Length = 116

 Score =  143 bits (72), Expect = 5e-34
 Identities = 91/96 (94%), Gaps = 1/96 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaatatctatttggtctaaaatccattagaaaa 60
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaatatgtatttggtctaatatccattagaaaa 70

                                               
Query: 61  -atagttcttcttaaatgaagtgtttgggggaactc 95
            |||||||||| | ||||||||||||||||||||||
Sbjct: 71  gatagttcttcatcaatgaagtgtttgggggaactc 106




>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
           (barrel medic)
          Length = 120

 Score =  125 bits (63), Expect = 1e-28
 Identities = 92/100 (92%), Gaps = 5/100 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaa----tatctatttggtctaaaatccatta- 55
           ||||||||||||||||||||||||||||||    |||||||||||| |||||||||||| 
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatccattag 70

                                                   
Query: 56  gaaaaatagttcttcttaaatgaagtgtttgggggaactc 95
           || | |||||||||||||||||||||||||||||||||||
Sbjct: 71  gatagatagttcttcttaaatgaagtgtttgggggaactc 110




>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
           (barrel medic)
          Length = 121

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 89/101 (88%), Gaps = 6/101 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaa----tatctatttggtctaaaatccattag 56
           ||||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 70

                                                    
Query: 57  aaaa-atag-ttcttcttaaatgaagtgtttgggggaactc 95
           |||| ||||    || || ||||||||||||||||||||||
Sbjct: 71  aaaagatagccattttttcaatgaagtgtttgggggaactc 111




>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
          (barrel medic)
          Length = 96

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 61 atagttcttcttaaatgaagtgtttgggggaactc 95
          ||||||||| || ||||||||||||||||||||||
Sbjct: 52 atagttcttgttcaatgaagtgtttgggggaactc 86




>RF00451;mir-395;AC149601.3/55942-55838 3880:Medicago truncatula
          (barrel medic)
          Length = 105

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 61 atagttcttcttaaatgaagtgtttgggggaactc 95
          ||||||||| || |||||||| |||||||||||||
Sbjct: 61 atagttcttgttcaatgaagtatttgggggaactc 95




>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
          Length = 114

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 69  tcttaaatgaagtgtttgggggaactc 95
           |||| ||||||||||||||||||||||
Sbjct: 78  tcttcaatgaagtgtttgggggaactc 104