miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 198 bits (100), Expect = 9e-51
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatccattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatccattag 70
Query: 61 gatagatagttcttcttaaatgaagtgtttgggggaactc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gatagatagttcttcttaaatgaagtgtttgggggaactc 110
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 125 bits (63), Expect = 1e-28
Identities = 92/100 (92%), Gaps = 5/100 (5%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatccattag 60
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaa----tatctatttggtctaaaatccatta- 65
Query: 61 gatagatagttcttcttaaatgaagtgtttgggggaactc 100
|| | |||||||||||||||||||||||||||||||||||
Sbjct: 66 gaaaaatagttcttcttaaatgaagtgtttgggggaactc 105
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 113 bits (57), Expect = 4e-25
Identities = 91/101 (90%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatccattag 60
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 70
Query: 61 gatagatag-ttcttcttaaatgaagtgtttgggggaactc 100
| |||||| || || ||||||||||||||||||||||
Sbjct: 71 aaaagatagccattttttcaatgaagtgtttgggggaactc 111
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 109 bits (55), Expect = 7e-24
Identities = 89/100 (89%), Gaps = 4/100 (4%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatccattag 60
||||||||||||||||||||||||||||||||| ||| ||||| ||| |||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatgtat----ttggtctaatatccattag 66
Query: 61 gatagatagttcttcttaaatgaagtgtttgggggaactc 100
| |||||||||||| | ||||||||||||||||||||||
Sbjct: 67 aaaagatagttcttcatcaatgaagtgtttgggggaactc 106
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 65 gatagttcttcttaaatgaagtgtttgggggaactc 100
|||||||||| || ||||||||||||||||||||||
Sbjct: 51 gatagttcttgttcaatgaagtgtttgggggaactc 86
>RF00451;mir-395;AC149601.3/55942-55838 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 65 gatagttcttcttaaatgaagtgtttgggggaactc 100
|||||||||| || |||||||| |||||||||||||
Sbjct: 60 gatagttcttgttcaatgaagtatttgggggaactc 95
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 74 tcttaaatgaagtgtttgggggaactc 100
|||| ||||||||||||||||||||||
Sbjct: 78 tcttcaatgaagtgtttgggggaactc 104
