miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 107 bits (54), Expect = 3e-23
Identities = 90/98 (91%), Gaps = 3/98 (3%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaaatatctctttggtttaaaatccattagaaa 60
|||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgag-aatatctatttggtctaaaatccattagaaa 69
Query: 61 agatagtattttcttctatgaagtgtttgggggaactc 98
| ||||| | ||||| |||||||||||||||||||||
Sbjct: 70 a-atagt-tcttcttaaatgaagtgtttgggggaactc 105
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 107 bits (54), Expect = 3e-23
Identities = 89/98 (90%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaaatatctctttggtttaaaatccattagaaa 60
|||||||||||||||||||||||||||| ||||| | |||||| ||| ||||||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgag-aatatgtatttggtctaatatccattagaaa 69
Query: 61 agatagtattttcttctatgaagtgtttgggggaactc 98
||||||| | ||| || |||||||||||||||||||||
Sbjct: 70 agatagt-tcttcatcaatgaagtgtttgggggaactc 106
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 101 bits (51), Expect = 2e-21
Identities = 90/101 (89%), Gaps = 4/101 (3%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaa---atatctctttggtttaaaatccattag 57
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatccattag 70
Query: 58 aaaagatagtattttcttctatgaagtgtttgggggaactc 98
| ||||||| | ||||| |||||||||||||||||||||
Sbjct: 71 gatagatagt-tcttcttaaatgaagtgtttgggggaactc 110
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 101 bits (51), Expect = 2e-21
Identities = 89/101 (88%), Gaps = 3/101 (2%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaaa---tatctctttggtttaaaatccattag 57
|||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 70
Query: 58 aaaagatagtattttcttctatgaagtgtttgggggaactc 98
||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 71 aaaagatagccattttttcaatgaagtgtttgggggaactc 111
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 45 taaaatccattagaaaagatagtattttcttctatgaagtgtttgggggaactc 98
|||| ||||||||||| ||||| | ||||| |||||||||||||||||||||
Sbjct: 51 taaactccattagaaatgatagccatgtcttcaatgaagtgtttgggggaactc 104
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 tatgaagtgtttgggggaactc 98
||||||||||||||||||||||
Sbjct: 72 tatgaagtgtttgggggaactc 93