miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
           (barrel medic)
          Length = 115

 Score =  107 bits (54), Expect = 3e-23
 Identities = 90/98 (91%), Gaps = 3/98 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaaatatctctttggtttaaaatccattagaaa 60
           |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgag-aatatctatttggtctaaaatccattagaaa 69

                                                 
Query: 61  agatagtattttcttctatgaagtgtttgggggaactc 98
           | ||||| | |||||  |||||||||||||||||||||
Sbjct: 70  a-atagt-tcttcttaaatgaagtgtttgggggaactc 105




>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
           (barrel medic)
          Length = 116

 Score =  107 bits (54), Expect = 3e-23
 Identities = 89/98 (90%), Gaps = 2/98 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaaatatctctttggtttaaaatccattagaaa 60
           |||||||||||||||||||||||||||| ||||| | |||||| ||| ||||||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgag-aatatgtatttggtctaatatccattagaaa 69

                                                 
Query: 61  agatagtattttcttctatgaagtgtttgggggaactc 98
           ||||||| | ||| || |||||||||||||||||||||
Sbjct: 70  agatagt-tcttcatcaatgaagtgtttgggggaactc 106




>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
           (barrel medic)
          Length = 120

 Score =  101 bits (51), Expect = 2e-21
 Identities = 90/101 (89%), Gaps = 4/101 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaa---atatctctttggtttaaaatccattag 57
           ||||||||||||||||||||||||||||||    ||||| ||||||||||||||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatccattag 70

                                                    
Query: 58  aaaagatagtattttcttctatgaagtgtttgggggaactc 98
            | ||||||| | |||||  |||||||||||||||||||||
Sbjct: 71  gatagatagt-tcttcttaaatgaagtgtttgggggaactc 110




>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
           (barrel medic)
          Length = 121

 Score =  101 bits (51), Expect = 2e-21
 Identities = 89/101 (88%), Gaps = 3/101 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaaa---tatctctttggtttaaaatccattag 57
           ||||||||||||||||||||||||||||||    ||||| |||||| |||| ||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 70

                                                    
Query: 58  aaaagatagtattttcttctatgaagtgtttgggggaactc 98
           |||||||||   ||| ||| |||||||||||||||||||||
Sbjct: 71  aaaagatagccattttttcaatgaagtgtttgggggaactc 111




>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
          Length = 114

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 45  taaaatccattagaaaagatagtattttcttctatgaagtgtttgggggaactc 98
           |||| ||||||||||| |||||   | ||||| |||||||||||||||||||||
Sbjct: 51  taaactccattagaaatgatagccatgtcttcaatgaagtgtttgggggaactc 104




>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
          (sorghum)
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 77 tatgaagtgtttgggggaactc 98
          ||||||||||||||||||||||
Sbjct: 72 tatgaagtgtttgggggaactc 93