miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 135 bits (68), Expect = 9e-32
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 1 gagttcctctgaatgcttcaatcatgagacaatctatatgaatagttcttgttcaatgaa 60
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 11 gagttcctctgaatgcttcaaacatgagacaatctatatggatagttcttgttcaatgaa 70
Query: 61 gtgtttgggggaactc 76
||||||||||||||||
Sbjct: 71 gtgtttgggggaactc 86
>RF00451;mir-395;AC149601.3/55942-55838 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 73.8 bits (37), Expect = 3e-13
Identities = 72/85 (84%), Gaps = 9/85 (10%)
Strand = Plus / Plus
Query: 1 gagttcctctgaatgcttcaatcatgagacaatcta---------tatgaatagttcttg 51
||||||||||||||||||||| ||||||||||||| |||| ||||||||||
Sbjct: 11 gagttcctctgaatgcttcaaacatgagacaatcttgatagaaattatggatagttcttg 70
Query: 52 ttcaatgaagtgtttgggggaactc 76
||||||||||| |||||||||||||
Sbjct: 71 ttcaatgaagtatttgggggaactc 95
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 56.0 bits (28), Expect = 6e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 41 aatagttcttgttcaatgaagtgtttgggggaactc 76
|||||||||| || ||||||||||||||||||||||
Sbjct: 70 aatagttcttcttaaatgaagtgtttgggggaactc 105
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 42 atagttcttgttcaatgaagtgtttgggggaactc 76
||||||||| || ||||||||||||||||||||||
Sbjct: 76 atagttcttcttaaatgaagtgtttgggggaactc 110
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 42 atagttcttgttcaatgaagtgtttgggggaactc 76
||||||||| ||||||||||||||||||||||||
Sbjct: 72 atagttcttcatcaatgaagtgtttgggggaactc 106
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 ttcaatgaagtgtttgggggaactc 76
|||||||||||||||||||||||||
Sbjct: 87 ttcaatgaagtgtttgggggaactc 111
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 ttcaatgaagtgtttgggggaactc 76
|||||||||||||||||||||||||
Sbjct: 80 ttcaatgaagtgtttgggggaactc 104
>RF00451;mir-395;AC149601.3/39285-39203 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 ttcaatgaagtgtttgggggaactc 76
|||| ||||||||||||||||||||
Sbjct: 49 ttcattgaagtgtttgggggaactc 73
>RF00451;mir-395;AC146854.19/48268-48370 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 atgaagtgtttgggggaactc 76
|||||||||||||||||||||
Sbjct: 73 atgaagtgtttgggggaactc 93
>RF00451;mir-395;AC145120.1/105818-105725 50514:Solanum demissum
Length = 94
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 atgaagtgtttgggggaactc 76
|||||||||||||||||||||
Sbjct: 64 atgaagtgtttgggggaactc 84
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 atgaagtgtttgggggaactc 76
|||||||||||||||||||||
Sbjct: 73 atgaagtgtttgggggaactc 93
