miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
           (barrel medic)
          Length = 121

 Score =  200 bits (101), Expect = 2e-51
 Identities = 101/101 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 70

                                                    
Query: 61  aaaagatagccattttttcaatgaagtgtttgggggaactc 101
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  aaaagatagccattttttcaatgaagtgtttgggggaactc 111




>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
           (barrel medic)
          Length = 120

 Score =  113 bits (57), Expect = 4e-25
 Identities = 91/101 (90%), Gaps = 1/101 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatccattag 70

                                                    
Query: 61  aaaagatagccattttttcaatgaagtgtttgggggaactc 101
            | ||||||    || || ||||||||||||||||||||||
Sbjct: 71  gatagatag-ttcttcttaaatgaagtgtttgggggaactc 110




>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
           (barrel medic)
          Length = 116

 Score = 89.7 bits (45), Expect = 6e-18
 Identities = 90/103 (87%), Gaps = 9/103 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 60
           ||||||||||||||||||||||||||||||    ||| ||||||||||||  ||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaa----tatgtatttggtctaatatccattag 66

                                                      
Query: 61  aaaagatagccattttt--tcaatgaagtgtttgggggaactc 101
           |||||||||   || ||  ||||||||||||||||||||||||
Sbjct: 67  aaaagatag---ttcttcatcaatgaagtgtttgggggaactc 106




>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
           (barrel medic)
          Length = 115

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 89/101 (88%), Gaps = 6/101 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 60
           ||||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||
Sbjct: 11  gagttcctttgaacgcttcatgcatgagaa----tatctatttggtctaaaatccattag 66

                                                    
Query: 61  aaaagatagccattttttcaatgaagtgtttgggggaactc 101
           |||| ||||    || || ||||||||||||||||||||||
Sbjct: 67  aaaa-atag-ttcttcttaaatgaagtgtttgggggaactc 105




>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
          Length = 114

 Score = 79.8 bits (40), Expect = 6e-15
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                   
Query: 46  tctaaagtccattagaaaagatagccattttttcaatgaagtgtttgggggaactc 101
           |||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct: 49  tctaaactccattagaaatgatagccatgtcttcaatgaagtgtttgggggaactc 104




>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
           (barrel medic)
          Length = 96

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 77  ttcaatgaagtgtttgggggaactc 101
           |||||||||||||||||||||||||
Sbjct: 62  ttcaatgaagtgtttgggggaactc 86