miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 200 bits (101), Expect = 2e-51
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 70
Query: 61 aaaagatagccattttttcaatgaagtgtttgggggaactc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 aaaagatagccattttttcaatgaagtgtttgggggaactc 111
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 113 bits (57), Expect = 4e-25
Identities = 91/101 (90%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 60
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatccattag 70
Query: 61 aaaagatagccattttttcaatgaagtgtttgggggaactc 101
| |||||| || || ||||||||||||||||||||||
Sbjct: 71 gatagatag-ttcttcttaaatgaagtgtttgggggaactc 110
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 89.7 bits (45), Expect = 6e-18
Identities = 90/103 (87%), Gaps = 9/103 (8%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 60
|||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaa----tatgtatttggtctaatatccattag 66
Query: 61 aaaagatagccattttt--tcaatgaagtgtttgggggaactc 101
||||||||| || || ||||||||||||||||||||||||
Sbjct: 67 aaaagatag---ttcttcatcaatgaagtgtttgggggaactc 106
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 87.7 bits (44), Expect = 3e-17
Identities = 89/101 (88%), Gaps = 6/101 (5%)
Strand = Plus / Plus
Query: 1 gagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtccattag 60
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 11 gagttcctttgaacgcttcatgcatgagaa----tatctatttggtctaaaatccattag 66
Query: 61 aaaagatagccattttttcaatgaagtgtttgggggaactc 101
|||| |||| || || ||||||||||||||||||||||
Sbjct: 67 aaaa-atag-ttcttcttaaatgaagtgtttgggggaactc 105
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 79.8 bits (40), Expect = 6e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 46 tctaaagtccattagaaaagatagccattttttcaatgaagtgtttgggggaactc 101
|||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct: 49 tctaaactccattagaaatgatagccatgtcttcaatgaagtgtttgggggaactc 104
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 ttcaatgaagtgtttgggggaactc 101
|||||||||||||||||||||||||
Sbjct: 62 ttcaatgaagtgtttgggggaactc 86