miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 tcttagagttcctttgaacgcttcatgcatgagaatatctatttggtctaaaatccatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tcttagagttcctttgaacgcttcatgcatgagaatatctatttggtctaaaatccatta 65
Query: 61 gaaaaatagttcttcttaaatgaagtgtttgggggaactcttggg 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gaaaaatagttcttcttaaatgaagtgtttgggggaactcttggg 110
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 163 bits (82), Expect = 6e-40
Identities = 101/106 (95%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 1 tcttagagttcctttgaacgcttcatgcatgagaatatctatttggtctaaaatccatta 60
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 6 tcttagagttcctttgaacgcttcatgcatgagaatatgtatttggtctaatatccatta 65
Query: 61 gaaaa-atagttcttcttaaatgaagtgtttgggggaactcttggg 105
||||| |||||||||| | |||||||||||||||||||||||||||
Sbjct: 66 gaaaagatagttcttcatcaatgaagtgtttgggggaactcttggg 111
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 145 bits (73), Expect = 1e-34
Identities = 102/110 (92%), Gaps = 5/110 (4%)
Strand = Plus / Plus
Query: 1 tcttagagttcctttgaacgcttcatgcatgagaa----tatctatttggtctaaaatcc 56
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 6 tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtttaaaatcc 65
Query: 57 atta-gaaaaatagttcttcttaaatgaagtgtttgggggaactcttggg 105
|||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 attaggatagatagttcttcttaaatgaagtgtttgggggaactcttggg 115
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 105 bits (53), Expect = 1e-22
Identities = 98/110 (89%), Gaps = 6/110 (5%)
Strand = Plus / Plus
Query: 1 tcttagagttcctttgaacgcttcatgcatgagaa----tatctatttggtctaaaatcc 56
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 6 tcttagagttcctttgaacgcttcatgcatgagaatatctatctatttggtctaaagtcc 65
Query: 57 attagaaaa-atag-ttcttcttaaatgaagtgtttgggggaactcttgg 104
||||||||| |||| || || ||||||||||||||||||||||||||
Sbjct: 66 attagaaaagatagccattttttcaatgaagtgtttgggggaactcttgg 115
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 66 atagttcttcttaaatgaagtgtttgggggaactcttgg 104
||||||||| || ||||||||||||||||||||||||||
Sbjct: 52 atagttcttgttcaatgaagtgtttgggggaactcttgg 90
>RF00451;mir-395;AC149601.3/55942-55838 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 66 atagttcttcttaaatgaagtgtttgggggaactcttgg 104
||||||||| || |||||||| |||||||||||||||||
Sbjct: 61 atagttcttgttcaatgaagtatttgggggaactcttgg 99
>RF00451;mir-395;AC146854.19/48268-48370 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 80 atgaagtgtttgggggaactcttggg 105
||||||||||||||||||||||||||
Sbjct: 73 atgaagtgtttgggggaactcttggg 98
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 80 atgaagtgtttgggggaactcttgg 104
|||||||||||||||||||||||||
Sbjct: 73 atgaagtgtttgggggaactcttgg 97
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tgaagtgtttgggggaactcttgg 104
||||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactcttgg 73
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tgaagtgtttgggggaactcttgg 104
||||||||||||||||||||||||
Sbjct: 57 tgaagtgtttgggggaactcttgg 80
>RF00451;mir-395;AC149601.3/39285-39203 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tgaagtgtttgggggaactcttgg 104
||||||||||||||||||||||||
Sbjct: 54 tgaagtgtttgggggaactcttgg 77
>RF00451;mir-395;BABK01002710.1/3004-3117 34305:Lotus japonicus
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 74 tcttaaatgaagtgtttgggggaactcttggg 105
|||| |||||||||||||||||||||| ||||
Sbjct: 78 tcttcaatgaagtgtttgggggaactcctggg 109
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tgaagtgtttgggggaactcttgg 104
||||||||||||||||||||||||
Sbjct: 62 tgaagtgtttgggggaactcttgg 85
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tgaagtgtttgggggaactcttgg 104
||||||||||||||||||||||||
Sbjct: 62 tgaagtgtttgggggaactcttgg 85
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tgaagtgtttgggggaactcttgg 104
||||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactcttgg 97
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tgaagtgtttgggggaactcttgg 104
||||||||||||||||||||||||
Sbjct: 56 tgaagtgtttgggggaactcttgg 79
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tgaagtgtttgggggaactcttgg 104
||||||||||||||||||||||||
Sbjct: 70 tgaagtgtttgggggaactcttgg 93
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tgaagtgtttgggggaactcttgg 104
||||||||||||||||||||||||
Sbjct: 85 tgaagtgtttgggggaactcttgg 108
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tgaagtgtttgggggaactcttg 103
|||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactcttg 72
>RF00451;mir-395;AC194694.1/82977-83070 4081:Solanum lycopersicum
Length = 94
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 83 aagtgtttgggggaactcttggg 105
|||||||||||||||||||||||
Sbjct: 67 aagtgtttgggggaactcttggg 89
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 tgaagtgtttgggggaactcttg 103
|||||||||||||||||||||||
Sbjct: 58 tgaagtgtttgggggaactcttg 80
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 tgaagtgtttgggggaactctt 102
||||||||||||||||||||||
Sbjct: 57 tgaagtgtttgggggaactctt 78
>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
Indica Group
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 tgaagtgtttgggggaactctt 102
||||||||||||||||||||||
Sbjct: 57 tgaagtgtttgggggaactctt 78
