miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC160628.37/77264-77379 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 198 bits (100), Expect = 1e-50
Identities = 113/116 (97%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 11 agttgaattacagggtgagttctccattggcaggtagctagtcactatatgatatgcatt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agttgaattacagggtgagttctccattggcaggtagctagtcactatatgatatgcatt 60
Query: 71 gcaa-tcatttcttagtgtgcaatctgccaaaggagatttgcccagcgattctcct 125
|||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 gcaattcatctcttagtgtgcaatctgccaaagaagatttgcccagcgattctcct 116
>RF00445;mir-399;AC160628.37/72380-72494 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 192 bits (97), Expect = 8e-49
Identities = 109/113 (96%)
Strand = Plus / Plus
Query: 11 agttgaattacagggtgagttctccattggcaggtagctagtcactatatgatatgcatt 70
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 agttgaattacagggtgagttctccattggcaggtagctagccactatatgatatgcatt 60
Query: 71 gcaatcatttcttagtgtgcaatctgccaaaggagatttgcccagcgattctc 123
|||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 gcaatcatcacttagtgtgtaatctgccaaaggagatttgcccagcgattctc 113
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 61.9 bits (31), Expect = 2e-09
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 58 tatgatatgcattgcaatcatt-tctt--agtgtgcaatctgccaaaggagatttgccca 114
||||||||||||||||| ||| |||| |||||| || |||||||||||||||||||||
Sbjct: 46 tatgatatgcattgcaaccatactctttgagtgtgtaacctgccaaaggagatttgccca 105
Query: 115 gcgattctcc 124
|| |||||||
Sbjct: 106 gcaattctcc 115
>RF00445;mir-399;AACV01003694.1/9714-9596 39947:Oryza sativa
Japonica Group
Length = 119
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 92 atctgccaaaggagatttgcccagcgattc 121
||||||||||||||||||||||||||||||
Sbjct: 86 atctgccaaaggagatttgcccagcgattc 115
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 84 agtgtgcaatctgccaaaggagatttgcccagcgattct 122
||||||| |||||||||||||||||||||||| |||||
Sbjct: 79 agtgtgccttctgccaaaggagatttgcccagcaattct 117
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 83 tagtgtgcaatctgccaaaggagatttgcccagcgattct 122
|||||||| ||||||||||||||||||||| || |||||
Sbjct: 74 tagtgtgccctctgccaaaggagatttgcccggcaattct 113
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccagc 116
||||||||||||||||||||||||
Sbjct: 69 tctgccaaaggagatttgcccagc 92
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccagc 116
||||||||||||||||||||||||
Sbjct: 85 tctgccaaaggagatttgcccagc 108
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccagc 116
|||||||||||||||||||||||
Sbjct: 76 ctgccaaaggagatttgcccagc 98
>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
Japonica Group
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccagc 116
|||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagc 109
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccag 115
||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccag 107
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 atctgccaaaggagatttgccc 113
||||||||||||||||||||||
Sbjct: 90 atctgccaaaggagatttgccc 111
>RF00445;mir-399;ABXC01002523.1/15097-15179 4558:Sorghum bicolor
(sorghum)
Length = 83
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccagcgat 119
|||||||||| |||||||||||||||
Sbjct: 52 ctgccaaaggggatttgcccagcgat 77
