miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;ABIM01002081.1/1084-952 3649:Carica papaya (papaya)
          Length = 133

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 70  acttgccaaaggagagctgccctgtga 96
           |||||||||||||||||||||||||||
Sbjct: 100 acttgccaaaggagagctgccctgtga 126




>RF00445;mir-399;AASG02006945.1/8927-9041 3988:Ricinus communis
           (castor bean)
          Length = 115

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 71  cttgccaaaggagagctgccctgtga 96
           ||||||||||||||||||||||||||
Sbjct: 83  cttgccaaaggagagctgccctgtga 108




>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
           cress)
          Length = 116

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 68  tcacttgccaaaggagagctgccctgt 94
           |||||||||||||||||| ||||||||
Sbjct: 80  tcacttgccaaaggagagttgccctgt 106




>RF00445;mir-399;BABK01105304.1/403-505 34305:Lotus japonicus
          Length = 103

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 70 acttgccaaaggagagctgccctgtg 95
          |||||||||||||||| |||||||||
Sbjct: 70 acttgccaaaggagagttgccctgtg 95