miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC160628.37/72380-72494 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 228 bits (115), Expect = 1e-59
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 11 agttgaattacagggtgagttctccattggcaggtagctagccactatatgatatgcatt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agttgaattacagggtgagttctccattggcaggtagctagccactatatgatatgcatt 60
Query: 71 gcaatcatcacttagtgtgtaatctgccaaaggagatttgcccagcgattctcat 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcaatcatcacttagtgtgtaatctgccaaaggagatttgcccagcgattctcat 115
>RF00445;mir-399;AC160628.37/77264-77379 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 178 bits (90), Expect = 1e-44
Identities = 109/114 (95%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 11 agttgaattacagggtgagttctccattggcaggtagctagccactatatgatatgcatt 70
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 agttgaattacagggtgagttctccattggcaggtagctagtcactatatgatatgcatt 60
Query: 71 gcaa-tcatcacttagtgtgtaatctgccaaaggagatttgcccagcgattctc 123
|||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 61 gcaattcatctcttagtgtgcaatctgccaaagaagatttgcccagcgattctc 114
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 67.9 bits (34), Expect = 3e-11
Identities = 62/69 (89%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 58 tatgatatgcattgcaatcat-cactt--agtgtgtaatctgccaaaggagatttgccca 114
||||||||||||||||| ||| | ||| ||||||||| |||||||||||||||||||||
Sbjct: 46 tatgatatgcattgcaaccatactctttgagtgtgtaacctgccaaaggagatttgccca 105
Query: 115 gcgattctc 123
|| ||||||
Sbjct: 106 gcaattctc 114
>RF00445;mir-399;AACV01003694.1/9714-9596 39947:Oryza sativa
Japonica Group
Length = 119
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 92 atctgccaaaggagatttgcccagcgattc 121
||||||||||||||||||||||||||||||
Sbjct: 86 atctgccaaaggagatttgcccagcgattc 115
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccagcgattct 122
|||||||||||||||||||||||| |||||
Sbjct: 88 tctgccaaaggagatttgcccagcaattct 117
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 82 ttagtgtgtaatctgccaaaggagatttgccc 113
|||||| || ||||||||||||||||||||||
Sbjct: 80 ttagtgagttatctgccaaaggagatttgccc 111
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccagc 116
||||||||||||||||||||||||
Sbjct: 69 tctgccaaaggagatttgcccagc 92
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccagc 116
||||||||||||||||||||||||
Sbjct: 85 tctgccaaaggagatttgcccagc 108
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccagc 116
|||||||||||||||||||||||
Sbjct: 76 ctgccaaaggagatttgcccagc 98
>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
Japonica Group
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccagc 116
|||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagc 109
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccag 115
||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccag 107
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccagcgattct 122
||||||||||||||||||||| || |||||
Sbjct: 84 tctgccaaaggagatttgcccggcaattct 113
>RF00445;mir-399;ABXC01002523.1/15097-15179 4558:Sorghum bicolor
(sorghum)
Length = 83
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccagcgat 119
|||||||||| |||||||||||||||
Sbjct: 52 ctgccaaaggggatttgcccagcgat 77
