miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 206 bits (104), Expect = 4e-53
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 ttacagggcatgttctcctttggcaggtagccatatgctatgatatgcattgcaaccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ttacagggcatgttctcctttggcaggtagccatatgctatgatatgcattgcaaccata 67
Query: 61 ctctttgagtgtgtaacctgccaaaggagatttgcccagcaatt 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ctctttgagtgtgtaacctgccaaaggagatttgcccagcaatt 111
>RF00445;mir-399;AC160628.37/72380-72494 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/62 (90%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 39 tatgatatgcattgcaaccatactctttgagtgtgtaacctgccaaaggagatttgccca 98
||||||||||||||||| ||| | ||| ||||||||| |||||||||||||||||||||
Sbjct: 48 tatgatatgcattgcaatcat-cactt--agtgtgtaatctgccaaaggagatttgccca 104
Query: 99 gc 100
||
Sbjct: 105 gc 106
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaatt 104
|||||||||||||||||||||||||||
Sbjct: 89 ctgccaaaggagatttgcccagcaatt 115
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaat 103
||||||||||||||||||||||||||
Sbjct: 76 ctgccaaaggagatttgcccagcaat 101
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaat 103
||||||||||||||||||||||||||
Sbjct: 70 ctgccaaaggagatttgcccagcaat 95
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaat 103
||||||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
Japonica Group
Length = 118
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaat 103
||||||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 68 agtgtgtaacctgccaaaggagatttgcccagcaatt 104
||||||| ||||||||||||||||||||||| ||||
Sbjct: 76 agtgtgttccctgccaaaggagatttgcccagtaatt 112
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 cctgccaaaggagatttgcccagcaatt 104
||||||||||||||||||||| ||||||
Sbjct: 62 cctgccaaaggagatttgcccggcaatt 89
>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
Length = 136
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaatt 104
|||||||||||||||||||| ||||||
Sbjct: 105 ctgccaaaggagatttgccccgcaatt 131
>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaatt 104
|||||||||||||||||||| ||||||
Sbjct: 106 ctgccaaaggagatttgccccgcaatt 132
>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaatt 104
|||||||||||||||||||| ||||||
Sbjct: 106 ctgccaaaggagatttgccccgcaatt 132
>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
Length = 119
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaatt 104
|||||||||||||||||||| ||||||
Sbjct: 88 ctgccaaaggagatttgccccgcaatt 114
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaatt 104
|||||||||||||||||||| ||||||
Sbjct: 78 ctgccaaaggagatttgcccggcaatt 104
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaatt 104
|||||||||||||||||||| ||||||
Sbjct: 69 ctgccaaaggagatttgccccgcaatt 95
>RF00445;mir-399;AARH01002119.1/17334-17454 3694:Populus trichocarpa
Length = 121
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaatt 104
|||||||||||||||||||| ||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaatt 116
>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
(castor bean)
Length = 108
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaatt 104
|||||||||||||||||||| ||||||
Sbjct: 77 ctgccaaaggagatttgccccgcaatt 103
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaatt 104
|||||||||||||||||||| ||||||
Sbjct: 85 ctgccaaaggagatttgcccggcaatt 111
>RF00445;mir-399;AACV01003694.1/9714-9596 39947:Oryza sativa
Japonica Group
Length = 119
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagc 100
|||||||||||||||||||||||
Sbjct: 88 ctgccaaaggagatttgcccagc 110
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 79 tgccaaaggagatttgcccagcaatt 104
||||||||||||||||||| ||||||
Sbjct: 92 tgccaaaggagatttgcccggcaatt 117
>RF00445;mir-399;AAAA02017707.1/11015-10916 39946:Oryza sativa
Indica Group
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaat 103
||||||||||||| ||||||||||||
Sbjct: 69 ctgccaaaggagacttgcccagcaat 94
>RF00445;mir-399;AC108499.3/125908-126006 39947:Oryza sativa
Japonica Group
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagcaat 103
||||||||||||| ||||||||||||
Sbjct: 68 ctgccaaaggagacttgcccagcaat 93
