miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC160628.37/99250-99151 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 178 bits (90), Expect = 8e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 aatgatagagcaaatctctattagcagaacgaagtagaaagcttggacatgcatgcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 aatgatagagcaaatctctattagcagaacgaagtagaaagcttggacatgcatgcttct 65
Query: 61 ggtttgccaaaggagatttgccctgccatt 90
||||||||||||||||||||||||||||||
Sbjct: 66 ggtttgccaaaggagatttgccctgccatt 95
>RF00445;mir-399;AC160628.37/103972-103869 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 35 tagaaagcttggacatgcatgcttctggtttgccaaaggagatttgccctgccatt 90
|||| |||||| |||||| ||||||| ||||||||||| |||||||||||||||||
Sbjct: 44 tagagagcttgaacatgcttgcttctagtttgccaaagaagatttgccctgccatt 99
>RF00445;mir-399;AC160628.37/109895-109796 3880:Medicago
truncatula (barrel medic)
Length = 100
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 57 ttctggtttgccaaaggagatttgccctgccatt 90
||||||||||||||||||||||||||||||||||
Sbjct: 62 ttctggtttgccaaaggagatttgccctgccatt 95
>RF00445;mir-399;AM467681.2/18299-18208 29760:Vitis vinifera
Length = 92
Score = 63.9 bits (32), Expect = 3e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 47 acatgcatgcttctggtttgccaaaggagatttgccctgccatt 90
|||||||| |||||| |||||||||||||| |||||||||||||
Sbjct: 44 acatgcatacttctgttttgccaaaggagaattgccctgccatt 87
>RF00445;mir-399;EU626443.1/55199-55104 47615:Gossypioides kirkii
Length = 96
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 63 tttgccaaaggagatttgccctgccatt 90
||||||||||||||||||||||||||||
Sbjct: 64 tttgccaaaggagatttgccctgccatt 91
>RF00445;mir-399;ABIM01002717.1/30662-30788 3649:Carica papaya
(papaya)
Length = 127
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 60 tggtttgccaaaggagatttgccctgccatt 90
||||||||||||||||| |||||||||||||
Sbjct: 92 tggtttgccaaaggagaattgccctgccatt 122
>RF00445;mir-399;AARH01002119.1/15983-15882 3694:Populus
trichocarpa
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 57 ttctggtttgccaaaggagatttgccctgccatt 90
||||| |||||||||||||| |||||||||||||
Sbjct: 64 ttctgttttgccaaaggagaattgccctgccatt 97
>RF00445;mir-399;ABXC01002522.1/3232-3121 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 ttgccaaaggagatttgccctgccatt 90
||||||||||||| |||||||||||||
Sbjct: 81 ttgccaaaggagaattgccctgccatt 107
>RF00445;mir-399;AARH01002114.1/15624-15718 3694:Populus
trichocarpa
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgccaaaggagatttgccctgccatt 90
|||||||||||| |||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgccatt 90
>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgccaaaggagatttgccctgccatt 90
|||||||||||| |||||||||||||
Sbjct: 83 tgccaaaggagaattgccctgccatt 108
>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgccaaaggagatttgccctgccatt 90
|||||||||||| |||||||||||||
Sbjct: 83 tgccaaaggagaattgccctgccatt 108
>RF00445;mir-399;AACV01003693.1/42206-42110 39947:Oryza sativa
Japonica Group
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgccaaaggagatttgccctgccatt 90
|||||||||||| |||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccatt 92
