miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC160628.37/100813-100915 3880:Medicago
          truncatula (barrel medic)
          Length = 103

 Score =  180 bits (91), Expect = 2e-45
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttactgggcaatgacttctttggcagtagttgacttgatcattcagatgatgcaaacaaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8  ttactgggcaatgacttctttggcagtagttgacttgatcattcagatgatgcaaacaaa 67

                                         
Query: 61 ctcaccgccaaagaagatttgccccgcaatt 91
          |||||||||||||||||||||||||||||||
Sbjct: 68 ctcaccgccaaagaagatttgccccgcaatt 98




>RF00445;mir-399;AARH01002114.1/23429-23543 3694:Populus trichocarpa
          Length = 115

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 61  ctcaccgccaaagaagatttgccccgcaatt 91
           ||||| |||||||||||||||||||||||||
Sbjct: 80  ctcactgccaaagaagatttgccccgcaatt 110




>RF00445;mir-399;AARH01014736.1/14382-14268 3694:Populus trichocarpa
          Length = 115

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 61  ctcaccgccaaagaagatttgccccgcaatt 91
           ||||| |||||||||||||||||||||||||
Sbjct: 80  ctcactgccaaagaagatttgccccgcaatt 110




>RF00445;mir-399;AASG02001979.1/11398-11282 3988:Ricinus communis
           (castor bean)
          Length = 117

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 61  ctcaccgccaaagaagatttgccccgcaatt 91
           ||||| |||||||||||||||||||||||||
Sbjct: 82  ctcactgccaaagaagatttgccccgcaatt 112




>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
          Length = 136

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 61  ctcaccgccaaagaagatttgccccgcaatt 91
           ||||| ||||||| |||||||||||||||||
Sbjct: 101 ctcactgccaaaggagatttgccccgcaatt 131




>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
           (upland cotton)
          Length = 137

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 61  ctcaccgccaaagaagatttgccccgcaatt 91
           ||||| ||||||| |||||||||||||||||
Sbjct: 102 ctcactgccaaaggagatttgccccgcaatt 132




>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
           (upland cotton)
          Length = 137

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 61  ctcaccgccaaagaagatttgccccgcaatt 91
           ||||| ||||||| |||||||||||||||||
Sbjct: 102 ctcactgccaaaggagatttgccccgcaatt 132




>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
          Length = 119

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 61  ctcaccgccaaagaagatttgccccgcaatt 91
           ||||| ||||||| |||||||||||||||||
Sbjct: 84  ctcactgccaaaggagatttgccccgcaatt 114




>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
           (castor bean)
          Length = 108

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 61  ctcaccgccaaagaagatttgccccgcaatt 91
           ||||| ||||||| |||||||||||||||||
Sbjct: 73  ctcactgccaaaggagatttgccccgcaatt 103