miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC160628.37/100813-100915 3880:Medicago
truncatula (barrel medic)
Length = 103
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 ttactgggcaatgacttctttggcagtagttgacttgatcattcagatgatgcaaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ttactgggcaatgacttctttggcagtagttgacttgatcattcagatgatgcaaacaaa 67
Query: 61 ctcaccgccaaagaagatttgccccgcaatt 91
|||||||||||||||||||||||||||||||
Sbjct: 68 ctcaccgccaaagaagatttgccccgcaatt 98
>RF00445;mir-399;AARH01002114.1/23429-23543 3694:Populus trichocarpa
Length = 115
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 61 ctcaccgccaaagaagatttgccccgcaatt 91
||||| |||||||||||||||||||||||||
Sbjct: 80 ctcactgccaaagaagatttgccccgcaatt 110
>RF00445;mir-399;AARH01014736.1/14382-14268 3694:Populus trichocarpa
Length = 115
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 61 ctcaccgccaaagaagatttgccccgcaatt 91
||||| |||||||||||||||||||||||||
Sbjct: 80 ctcactgccaaagaagatttgccccgcaatt 110
>RF00445;mir-399;AASG02001979.1/11398-11282 3988:Ricinus communis
(castor bean)
Length = 117
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 61 ctcaccgccaaagaagatttgccccgcaatt 91
||||| |||||||||||||||||||||||||
Sbjct: 82 ctcactgccaaagaagatttgccccgcaatt 112
>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
Length = 136
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 61 ctcaccgccaaagaagatttgccccgcaatt 91
||||| ||||||| |||||||||||||||||
Sbjct: 101 ctcactgccaaaggagatttgccccgcaatt 131
>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 61 ctcaccgccaaagaagatttgccccgcaatt 91
||||| ||||||| |||||||||||||||||
Sbjct: 102 ctcactgccaaaggagatttgccccgcaatt 132
>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 61 ctcaccgccaaagaagatttgccccgcaatt 91
||||| ||||||| |||||||||||||||||
Sbjct: 102 ctcactgccaaaggagatttgccccgcaatt 132
>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
Length = 119
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 61 ctcaccgccaaagaagatttgccccgcaatt 91
||||| ||||||| |||||||||||||||||
Sbjct: 84 ctcactgccaaaggagatttgccccgcaatt 114
>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
(castor bean)
Length = 108
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 61 ctcaccgccaaagaagatttgccccgcaatt 91
||||| ||||||| |||||||||||||||||
Sbjct: 73 ctcactgccaaaggagatttgccccgcaatt 103