miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC160628.37/103972-103869 3880:Medicago
          truncatula (barrel medic)
          Length = 104

 Score =  186 bits (94), Expect = 3e-47
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aatgataggggaaatctcttttggcagagaggagtagctagagagcttgaacatgcttgc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6  aatgataggggaaatctcttttggcagagaggagtagctagagagcttgaacatgcttgc 65

                                            
Query: 61 ttctagtttgccaaagaagatttgccctgccatt 94
          ||||||||||||||||||||||||||||||||||
Sbjct: 66 ttctagtttgccaaagaagatttgccctgccatt 99




>RF00445;mir-399;AC160628.37/99250-99151 3880:Medicago truncatula
          (barrel medic)
          Length = 100

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                  
Query: 39 tagagagcttgaacatgcttgcttctagtttgccaaagaagatttgccctgccatt 94
          |||| |||||| |||||| ||||||| ||||||||||| |||||||||||||||||
Sbjct: 40 tagaaagcttggacatgcatgcttctggtttgccaaaggagatttgccctgccatt 95




>RF00445;mir-399;AC160628.37/109895-109796 3880:Medicago
          truncatula (barrel medic)
          Length = 100

 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 79/94 (84%), Gaps = 4/94 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  aatgataggggaaatctcttttggcagagaggagtagctagagagcttgaacatgcttgc 60
          |||||||||| |||||||||||||||||||||||    || | | ||| |||| |  || 
Sbjct: 6  aatgatagggaaaatctcttttggcagagaggag----taaaaatcttaaacaggaatgt 61

                                            
Query: 61 ttctagtttgccaaagaagatttgccctgccatt 94
          |||| ||||||||||| |||||||||||||||||
Sbjct: 62 ttctggtttgccaaaggagatttgccctgccatt 95




>RF00445;mir-399;EU626443.1/55199-55104 47615:Gossypioides kirkii
          Length = 96

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 67 tttgccaaagaagatttgccctgccatt 94
          |||||||||| |||||||||||||||||
Sbjct: 64 tttgccaaaggagatttgccctgccatt 91