miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC160628.37/103972-103869 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 aatgataggggaaatctcttttggcagagaggagtagctagagagcttgaacatgcttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 aatgataggggaaatctcttttggcagagaggagtagctagagagcttgaacatgcttgc 65
Query: 61 ttctagtttgccaaagaagatttgccctgccatt 94
||||||||||||||||||||||||||||||||||
Sbjct: 66 ttctagtttgccaaagaagatttgccctgccatt 99
>RF00445;mir-399;AC160628.37/99250-99151 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 39 tagagagcttgaacatgcttgcttctagtttgccaaagaagatttgccctgccatt 94
|||| |||||| |||||| ||||||| ||||||||||| |||||||||||||||||
Sbjct: 40 tagaaagcttggacatgcatgcttctggtttgccaaaggagatttgccctgccatt 95
>RF00445;mir-399;AC160628.37/109895-109796 3880:Medicago
truncatula (barrel medic)
Length = 100
Score = 65.9 bits (33), Expect = 9e-11
Identities = 79/94 (84%), Gaps = 4/94 (4%)
Strand = Plus / Plus
Query: 1 aatgataggggaaatctcttttggcagagaggagtagctagagagcttgaacatgcttgc 60
|||||||||| ||||||||||||||||||||||| || | | ||| |||| | ||
Sbjct: 6 aatgatagggaaaatctcttttggcagagaggag----taaaaatcttaaacaggaatgt 61
Query: 61 ttctagtttgccaaagaagatttgccctgccatt 94
|||| ||||||||||| |||||||||||||||||
Sbjct: 62 ttctggtttgccaaaggagatttgccctgccatt 95
>RF00445;mir-399;EU626443.1/55199-55104 47615:Gossypioides kirkii
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 67 tttgccaaagaagatttgccctgccatt 94
|||||||||| |||||||||||||||||
Sbjct: 64 tttgccaaaggagatttgccctgccatt 91