miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;ABIM01002081.1/1084-952 3649:Carica papaya (papaya)
Length = 133
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 acttgccaaaggagagctgccctg 87
||||||||||||||||||||||||
Sbjct: 100 acttgccaaaggagagctgccctg 123
>RF00445;mir-399;AASG02006945.1/8927-9041 3988:Ricinus communis
(castor bean)
Length = 115
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 cttgccaaaggagagctgccctg 87
|||||||||||||||||||||||
Sbjct: 83 cttgccaaaggagagctgccctg 105
>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 tcacttgccaaaggagagctgccctg 87
|||||||||||||||||| |||||||
Sbjct: 80 tcacttgccaaaggagagttgccctg 105
>RF00445;mir-399;EU949059.1/171-61 4577:Zea mays
Length = 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagagctgccctgc 88
||||||||||||||||||||||
Sbjct: 81 tgccaaaggagagctgccctgc 102
>RF00445;mir-399;ABXC01002521.1/23780-23678 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagagctgccctgc 88
||||||||||||||||||||||
Sbjct: 73 tgccaaaggagagctgccctgc 94
>RF00445;mir-399;AP008208.1/7649784-7649899 39947:Oryza sativa
Japonica Group
Length = 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagagctgccctgc 88
||||||||||||||||||||||
Sbjct: 86 tgccaaaggagagctgccctgc 107
