miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
          Length = 179

 Score =  159 bits (80), Expect = 1e-38
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9  ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 68

                              
Query: 61 tcgacatgactggttgttgt 80
          ||||||||||||||||||||
Sbjct: 69 tcgacatgactggttgttgt 88



 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                      
Query: 118 gaatagcgaattggatcccgccttgcatcaactgaatcggagg 160
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gaatagcgaattggatcccgccttgcatcaactgaatcggagg 168




>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
          trichocarpa
          Length = 155

 Score =  113 bits (57), Expect = 7e-25
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
          ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 68

           
Query: 61 t 61
          |
Sbjct: 69 t 69



 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 125 gaattggatcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||||||||||||||
Sbjct: 109 gaattggatcccgccttgcatcaactgaatcggag 143




>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
          Length = 76

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 122 agcgaattggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 27  agcgaattggatcccgccttgcatcaactgaatcggag 64




>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
          bittercress)
          Length = 126

 Score = 73.8 bits (37), Expect = 6e-13
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37
          |||||||||||||||||||||||||||||||||||||
Sbjct: 9  ggtctctgattcgcttggtgcaggtcgggaactgatt 45



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 133 tcccgccttgcatcaactgaatc 155
           |||||||||||||||||||||||
Sbjct: 88  tcccgccttgcatcaactgaatc 110




>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
           (barrel medic)
          Length = 121

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 125 gaattggatcccgccttgcatcaactgaatcggagg 160
           ||||||||||||||||||||||||||||||||||||
Sbjct: 75  gaattggatcccgccttgcatcaactgaatcggagg 110



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 1  ggtctctgattcgcttggtgcaggtcgggaac 32
          ||||||| ||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
           bittercress)
          Length = 138

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 125 gaattggatcccgccttgcatcaactgaatcgga 158
           ||||||||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactgaatcgga 124



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 8  gattcgcttggtgcaggtcgggaact 33
          ||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaact 41




>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
          Length = 139

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 127 attggatcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||||||||||||
Sbjct: 93  attggatcccgccttgcatcaactgaatcggag 125



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 8  gattcgcttggtgcaggtcgggaact 33
          ||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaact 41




>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
          Length = 139

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 127 attggatcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||||||||||||
Sbjct: 93  attggatcccgccttgcatcaactgaatcggag 125



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 8  gattcgcttggtgcaggtcgggaactgatt 37
          ||||||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
          Length = 126

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37
          |||||| ||||||||||||||||||||||||||||||
Sbjct: 9  ggtctcagattcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
          Length = 139

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 127 attggatcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||||||||||||
Sbjct: 94  attggatcccgccttgcatcaactgaatcggag 126



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  gattcgcttggtgcaggtcgggaac 32
          |||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
          Length = 137

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 127 attggatcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||||||||||||
Sbjct: 91  attggatcccgccttgcatcaactgaatcggag 123



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  gattcgcttggtgcaggtcgggaac 32
          |||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
          Length = 136

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37
          |||||| ||||||||||||||||||||||||||||||
Sbjct: 9  ggtctcggattcgcttggtgcaggtcgggaactgatt 45



 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 130 ggatcccgccttgcatcaactgaatcggagg 160
           |||||||||||||||||||||||||||||||
Sbjct: 95  ggatcccgccttgcatcaactgaatcggagg 125




>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
          (thale cress)
          Length = 126

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37
          |||||| ||||||||||||||||||||||||||||||
Sbjct: 9  ggtctcggattcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
          Length = 109

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37
          |||||| ||||||||||||||||||||||||||||||
Sbjct: 9  ggtctcagattcgcttggtgcaggtcgggaactgatt 45



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 131 gatcccgccttgcatcaactgaatc 155
           |||||||||||||||||||||||||
Sbjct: 69  gatcccgccttgcatcaactgaatc 93




>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
          (castor bean)
          Length = 156

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37
          ||||||| |||||||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaactgatt 45



 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 125 gaattggatcccgccttgcatcaactgaatcg 156
           ||||||||||||||||||||||||||||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcg 141




>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
           cress)
          Length = 142

 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 127 attggatcccgccttgcatcaactgaatcgga 158
           ||||||||||||||||||||||||||||||||
Sbjct: 97  attggatcccgccttgcatcaactgaatcgga 128



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 8  gattcgcttggtgcaggtcgggaactgattcggc 41
          |||||||||||||||||||||||||  |||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaaccaattcggc 49




>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
          Length = 131

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 8  gattcgcttggtgcaggtcgggaactgattc 38
          |||||||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattc 46



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 133 tcccgccttgcatcaactgaatcgga 158
           |||||| |||||||||||||||||||
Sbjct: 92  tcccgctttgcatcaactgaatcgga 117




>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
          Length = 126

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 8  gattcgcttggtgcaggtcgggaactgatt 37
          ||||||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgatt 45



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 137 gccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||
Sbjct: 92  gccttgcatcaactgaatcggag 114




>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
          Length = 136

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 8  gattcgcttggtgcaggtcgggaactgatt 37
          ||||||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgatt 45



 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 133 tcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||||||
Sbjct: 98  tcccgccttgcatcaactgaatcggag 124




>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
          Length = 136

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 127 attggatcccgccttgcatcaactgaatcggag 159
           ||||| |||||||||||||||||||||||||||
Sbjct: 90  attggctcccgccttgcatcaactgaatcggag 122



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  gattcgcttggtgcaggtcggga 30
          |||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcggga 38




>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
           pekinensis
          Length = 137

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 127 attggatcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||| ||||||||||
Sbjct: 91  attggatcccgccttgcatcaaatgaatcggag 123



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  gattcgcttggtgcaggtcgggaac 32
          |||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
          (barrel medic)
          Length = 112

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 4  ctctgattcgcttggtgcaggtcgggaac 32
          |||||||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaac 40



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 126 aattggatcccgccttgcatcaactgaatcggagg 160
           |||||||||| ||||||||||||  ||||||||||
Sbjct: 67  aattggatcctgccttgcatcaatcgaatcggagg 101




>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
          Length = 147

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 131 gatcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggag 135



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 1  ggtctctgattcgcttggtgcaggtcgggaac 32
          ||||||| ||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
          Length = 102

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 61  ggatcccgccttgcaccaagtgaatcggag 90




>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
           Group
          Length = 104

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92