miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AARH01003347.1/61012-61135 3694:Populus
trichocarpa
Length = 124
Score = 200 bits (101), Expect = 2e-51
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 1 gatgttcggtagccaaggacgacttgcccacactatgagacaagtggttagaattagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gatgttcggtagccaaggacgacttgcccacactatgagacaagtggttagaattagcaa 55
Query: 61 cttcttaattggttatgggaagtctccttggctatgctgac 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 cttcttaattggttatgggaagtctccttggctatgctgac 14
>RF00645;MIR169_2;AARH01003347.1/61128-61018 3694:Populus
trichocarpa
Length = 111
Score = 200 bits (101), Expect = 2e-51
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 gatgttcggtagccaaggacgacttgcccacactatgagacaagtggttagaattagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gatgttcggtagccaaggacgacttgcccacactatgagacaagtggttagaattagcaa 63
Query: 61 cttcttaattggttatgggaagtctccttggctatgctgac 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cttcttaattggttatgggaagtctccttggctatgctgac 104
>RF00865;MIR169_5;AARH01004262.1/367-494 3694:Populus trichocarpa
Length = 128
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 tgttcggtagccaaggacgacttgcccac 31
|||| ||||||||||||||||||||||||
Sbjct: 117 tgtttggtagccaaggacgacttgcccac 89
>RF00865;MIR169_5;AARH01002590.1/191263-191135 3694:Populus
trichocarpa
Length = 129
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 9 gtagccaaggacgacttgcccacactatg 37
|||||||||||||||||||||||| ||||
Sbjct: 112 gtagccaaggacgacttgcccacaatatg 84
>RF00645;MIR169_2;AARH01002590.1/191142-191257 3694:Populus
trichocarpa
Length = 116
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtagccaaggacgacttgcccacactatg 37
|||||||||||||||||||||||| ||||
Sbjct: 11 gtagccaaggacgacttgcccacaatatg 39
>RF00645;MIR169_2;AARH01004261.1/78455-78341 3694:Populus
trichocarpa
Length = 115
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgttcggtagccaaggacgacttgcccac 31
|||| ||||||||||||||||||||||||
Sbjct: 5 tgtttggtagccaaggacgacttgcccac 33
>RF00865;MIR169_5;AARH01000472.1/145584-145453 3694:Populus
trichocarpa
Length = 132
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 3 tgttcggtagccaaggacgacttgcccacactatg 37
|||| |||||||||||| ||||||||||| |||||
Sbjct: 120 tgtttggtagccaaggatgacttgcccactctatg 86
>RF00645;MIR169_2;AARH01000472.1/145460-145578 3694:Populus
trichocarpa
Length = 119
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 3 tgttcggtagccaaggacgacttgcccacactatg 37
|||| |||||||||||| ||||||||||| |||||
Sbjct: 6 tgtttggtagccaaggatgacttgcccactctatg 40
