miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AARH01004262.1/367-494 3694:Populus trichocarpa
          Length = 128

 Score =  212 bits (107), Expect = 7e-55
 Identities = 107/107 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccagtatattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cctgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccagtatattac 60

                                                          
Query: 61  tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 13




>RF00645;MIR169_2;AARH01004261.1/78455-78341 3694:Populus
           trichocarpa
          Length = 115

 Score =  200 bits (101), Expect = 3e-51
 Identities = 104/105 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccagtatattactg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5   tgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccaatatattactg 64

                                                        
Query: 63  ggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ggcaccttccatttggttttgggcaagcaccttggctagctgaca 109




>RF00865;MIR169_5;AARH01003347.1/60268-60395 3694:Populus
           trichocarpa
          Length = 128

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 89/105 (84%)
 Strand = Plus / Minus

                                                                       
Query: 3   tgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccagtatattactg 62
           ||||||| ||||||||| |||||||||  || | |||||| ||| |||||| ||||||| 
Sbjct: 117 tgtttggcagccaaggaagacttgcccgtcatcgtcttagctggttccagtgtattactt 58

                                                        
Query: 63  ggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
            |||||||   |||||||||||| |||||||||| ||||||||||
Sbjct: 57  agcaccttttgtttggttttggggaagcaccttgactagctgaca 13




>RF00865;MIR169_5;AARH01003823.1/108214-108346 3694:Populus
           trichocarpa
          Length = 133

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 3   tgtttggtagccaaggacgacttgcccac 31
           ||||||||||||||||| |||||||||||
Sbjct: 121 tgtttggtagccaaggatgacttgcccac 93




>RF00865;MIR169_5;AARH01000472.1/145584-145453 3694:Populus
           trichocarpa
          Length = 132

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 3   tgtttggtagccaaggacgacttgcccac 31
           ||||||||||||||||| |||||||||||
Sbjct: 120 tgtttggtagccaaggatgacttgcccac 92




>RF00865;MIR169_5;AARH01003347.1/61012-61135 3694:Populus
           trichocarpa
          Length = 124

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 3   tgtttggtagccaaggacgacttgcccac 31
           |||| ||||||||||||||||||||||||
Sbjct: 112 tgttcggtagccaaggacgacttgcccac 84




>RF00645;MIR169_2;AARH01003823.1/108339-108220 3694:Populus
          trichocarpa
          Length = 120

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 3  tgtttggtagccaaggacgacttgcccac 31
          ||||||||||||||||| |||||||||||
Sbjct: 6  tgtttggtagccaaggatgacttgcccac 34




>RF00645;MIR169_2;AARH01003347.1/61128-61018 3694:Populus
          trichocarpa
          Length = 111

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 3  tgtttggtagccaaggacgacttgcccac 31
          |||| ||||||||||||||||||||||||
Sbjct: 6  tgttcggtagccaaggacgacttgcccac 34




>RF00645;MIR169_2;AARH01000472.1/145460-145578 3694:Populus
          trichocarpa
          Length = 119

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 3  tgtttggtagccaaggacgacttgcccac 31
          ||||||||||||||||| |||||||||||
Sbjct: 6  tgtttggtagccaaggatgacttgcccac 34




>RF00865;MIR169_5;AASG02003632.1/18323-18451 3988:Ricinus communis
           (castor bean)
          Length = 129

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 4   gtttggtagccaaggacgacttgcccac 31
           |||||||||||||||| |||||||||||
Sbjct: 114 gtttggtagccaaggatgacttgcccac 87




>RF00645;MIR169_2;AASG02003632.1/18444-18329 3988:Ricinus communis
          (castor bean)
          Length = 116

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 4  gtttggtagccaaggacgacttgcccac 31
          |||||||||||||||| |||||||||||
Sbjct: 9  gtttggtagccaaggatgacttgcccac 36




>RF00865;MIR169_5;ABIM01022203.1/1875-2012 3649:Carica papaya
           (papaya)
          Length = 138

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 2   ctgtttggtagccaaggacgacttgcc 28
           |||||||||||||||||| ||||||||
Sbjct: 124 ctgtttggtagccaaggatgacttgcc 98




>RF00865;MIR169_5;AARH01002590.1/191263-191135 3694:Populus
           trichocarpa
          Length = 129

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 9   gtagccaaggacgacttgcccac 31
           |||||||||||||||||||||||
Sbjct: 112 gtagccaaggacgacttgcccac 90




>RF00865;MIR169_5;AASG02003632.1/10304-10430 3988:Ricinus communis
           (castor bean)
          Length = 127

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 3   tgtttggtagccaaggacgacttgccc 29
           ||||||||||||||||| |||||||||
Sbjct: 115 tgtttggtagccaaggatgacttgccc 89




>RF00645;MIR169_2;ABIM01022203.1/2003-1881 3649:Carica papaya
          (papaya)
          Length = 123

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 2  ctgtttggtagccaaggacgacttgcc 28
          |||||||||||||||||| ||||||||
Sbjct: 6  ctgtttggtagccaaggatgacttgcc 32




>RF00645;MIR169_2;AARH01002590.1/191142-191257 3694:Populus
          trichocarpa
          Length = 116

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  gtagccaaggacgacttgcccac 31
          |||||||||||||||||||||||
Sbjct: 11 gtagccaaggacgacttgcccac 33




>RF00865;MIR169_5;ABIM01001939.1/16104-16248 3649:Carica papaya
           (papaya)
          Length = 145

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 3   tgtttggtagccaaggacgacttgcc 28
           ||||||||||||||||| ||||||||
Sbjct: 131 tgtttggtagccaaggatgacttgcc 106




>RF00865;MIR169_5;AARH01000583.1/30070-29928 3694:Populus
           trichocarpa
          Length = 143

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 3   tgtttggtagccaaggacgacttgcc 28
           ||||||||||||||||| ||||||||
Sbjct: 131 tgtttggtagccaaggatgacttgcc 106




>RF00865;MIR169_5;AC216452.1/111365-111227 3694:Populus trichocarpa
          Length = 139

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 3   tgtttggtagccaaggacgacttgcc 28
           ||||||||||||||||| ||||||||
Sbjct: 127 tgtttggtagccaaggatgacttgcc 102




>RF00865;MIR169_5;AASG02003941.1/7647-7771 3988:Ricinus communis
           (castor bean)
          Length = 125

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 2   ctgtttggtagccaaggacgacttgcccac 31
           ||||||| |||||||||| |||||||||||
Sbjct: 114 ctgtttgatagccaaggatgacttgcccac 85




>RF00645;MIR169_2;ABIM01001939.1/16240-16110 3649:Carica papaya
          (papaya)
          Length = 131

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 3  tgtttggtagccaaggacgacttgcc 28
          ||||||||||||||||| ||||||||
Sbjct: 7  tgtttggtagccaaggatgacttgcc 32




>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
          trichocarpa
          Length = 210

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 3  tgtttggtagccaaggacgacttgcc 28
          ||||||||||||||||| ||||||||
Sbjct: 6  tgtttggtagccaaggatgacttgcc 31




>RF00645;MIR169_2;AC216452.1/111234-111359 3694:Populus
          trichocarpa
          Length = 126

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 3  tgtttggtagccaaggacgacttgcc 28
          ||||||||||||||||| ||||||||
Sbjct: 6  tgtttggtagccaaggatgacttgcc 31




>RF00645;MIR169_2;AARH01000583.1/29935-30064 3694:Populus
          trichocarpa
          Length = 130

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 3  tgtttggtagccaaggacgacttgcc 28
          ||||||||||||||||| ||||||||
Sbjct: 6  tgtttggtagccaaggatgacttgcc 31




>RF00645;MIR169_2;AASG02003941.1/7763-7653 3988:Ricinus communis
          (castor bean)
          Length = 111

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 2  ctgtttggtagccaaggacgacttgcccac 31
          ||||||| |||||||||| |||||||||||
Sbjct: 4  ctgtttgatagccaaggatgacttgcccac 33