miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 337 bits (170), Expect = 3e-92
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 1 gcgtggcatcatcaagattcacacactgcttgcaaatgcatacatgcatctctgccgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gcgtggcatcatcaagattcacacactgcttgcaaatgcatacatgcatctctgccgcct 70
Query: 61 tctttgcctgccattaatagcagttttactacatgttttagctgctgctgcatcatatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tctttgcctgccattaatagcagttttactacatgttttagctgctgctgcatcatatat 130
Query: 121 gcctctgtgaatatatatgtgtatgtgtgggaatcttgatgatgctgcat 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gcctctgtgaatatatatgtgtatgtgtgggaatcttgatgatgctgcat 180
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 79.8 bits (40), Expect = 1e-14
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 131 atatatatgtgtatgtgtgggaatcttgatgatgctgcat 170
||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 atatatatgtgtatgtgtgggaatcttgatgatgctgcat 145
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 3 gtggcatcatcaagattcacacactgc 29
|||||||||||||||||||||||||||
Sbjct: 13 gtggcatcatcaagattcacacactgc 39
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 79.8 bits (40), Expect = 1e-14
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 131 atatatatgtgtatgtgtgggaatcttgatgatgctgcat 170
||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 atatatatgtgtatgtgtgggaatcttgatgatgctgcat 143
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 3 gtggcatcatcaagattcacacactgc 29
|||||||||||||||||||||||||||
Sbjct: 13 gtggcatcatcaagattcacacactgc 39
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 142 tatgtgtgggaatcttgatgatgctgcat 170
|||||||||||||||||||||||||||||
Sbjct: 200 tatgtgtgggaatcttgatgatgctgcat 228
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 cgtggcatcatcaagattcacaca 25
||||||||||||||||||||||||
Sbjct: 12 cgtggcatcatcaagattcacaca 35
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 147 gtgggaatcttgatgatgctgcat 170
||||||||||||||||||||||||
Sbjct: 92 gtgggaatcttgatgatgctgcat 115
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 146 tgtgggaatcttgatgatgctgca 169
||||||||||||||||||||||||
Sbjct: 106 tgtgggaatcttgatgatgctgca 129
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 148 tgggaatcttgatgatgctgcat 170
|||||||||||||||||||||||
Sbjct: 99 tgggaatcttgatgatgctgcat 121
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 148 tgggaatcttgatgatgctgcat 170
|||||||||||||||||||||||
Sbjct: 65 tgggaatcttgatgatgctgcat 87
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 148 tgggaatcttgatgatgctgcat 170
|||||||||||||||||||||||
Sbjct: 102 tgggaatcttgatgatgctgcat 124
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 148 tgggaatcttgatgatgctgcat 170
|||||||||||||||||||||||
Sbjct: 151 tgggaatcttgatgatgctgcat 173
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 148 tgggaatcttgatgatgctgcat 170
|||||||||||||||||||||||
Sbjct: 103 tgggaatcttgatgatgctgcat 125
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcgtggcatcatcaagattcaca 23
|||||||||||||||||||||||
Sbjct: 11 gcgtggcatcatcaagattcaca 33
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa
Japonica Group
Length = 109
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcgtggcatcatcaagattcaca 23
|||||||||||||||||||||||
Sbjct: 11 gcgtggcatcatcaagattcaca 33
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tgggaatcttgatgatgctgca 169
||||||||||||||||||||||
Sbjct: 169 tgggaatcttgatgatgctgca 190
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 140 tgtatgtgtgggaatcttgatgatgctgca 169
||||||| || |||||||||||||||||||
Sbjct: 83 tgtatgtatgagaatcttgatgatgctgca 112
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tgggaatcttgatgatgctgca 169
||||||||||||||||||||||
Sbjct: 112 tgggaatcttgatgatgctgca 133
>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
Length = 132
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tgggaatcttgatgatgctgca 169
||||||||||||||||||||||
Sbjct: 106 tgggaatcttgatgatgctgca 127
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tgggaatcttgatgatgctgca 169
||||||||||||||||||||||
Sbjct: 124 tgggaatcttgatgatgctgca 145
>RF00452;mir-172;ABXC01000976.1/316269-316174 4558:Sorghum bicolor
(sorghum)
Length = 96
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 144 tgtgtgggaatcttgatgatgctgca 169
|||||| |||||||||||||||||||
Sbjct: 60 tgtgtgtgaatcttgatgatgctgca 85
