miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatgaagctctttgcattatattggcggatgtagcattgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gttcccttcaagcacttcacatgaagctctttgcattatattggcggatgtagcattgag 72
Query: 61 accaatgtgaagtgtttgggggaactc 87
|||||||||||||||||||||||||||
Sbjct: 73 accaatgtgaagtgtttgggggaactc 99
>RF00451;mir-395;ABXC01004559.1/91066-91167 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 73.8 bits (37), Expect = 3e-13
Identities = 74/87 (85%), Gaps = 7/87 (8%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatgaagctctttgcattatattggcggatgtagcattgag 60
|||||||||||||||||||||||||||| | | |||||| ||||||| |||||
Sbjct: 13 gttcccttcaagcacttcacatgaagct-------tcacattggcagatgtagtcttgag 65
Query: 61 accaatgtgaagtgtttgggggaactc 87
||||||||||||||||||| |||||||
Sbjct: 66 accaatgtgaagtgtttggaggaactc 92
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 caatgtgaagtgtttgggggaactc 87
|||||||||||||||||||||||||
Sbjct: 65 caatgtgaagtgtttgggggaactc 89
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatga 24
||||||||||||||||||||||||
Sbjct: 13 gttcccttcaagcacttcacatga 36
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 aatgtgaagtgtttgggggaactc 87
||||||||||||||||||||||||
Sbjct: 70 aatgtgaagtgtttgggggaactc 93
>RF00451;mir-395;ABXC01004559.1/91372-91477 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatg 23
|||||||||||||||||||||||
Sbjct: 13 gttcccttcaagcacttcacatg 35
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 atgtgaagtgtttgggggaactc 87
|||||||||||||||||||||||
Sbjct: 55 atgtgaagtgtttgggggaactc 77
>RF00451;mir-395;AACV01010557.1/49631-49718 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 atgtgaagtgtttgggggaactc 87
|||||||||||||||||||||||
Sbjct: 56 atgtgaagtgtttgggggaactc 78
>RF00451;mir-395;AAAA02014816.1/37465-37552 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 atgtgaagtgtttgggggaactc 87
|||||||||||||||||||||||
Sbjct: 56 atgtgaagtgtttgggggaactc 78
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 tgtgaagtgtttgggggaactc 87
||||||||||||||||||||||
Sbjct: 60 tgtgaagtgtttgggggaactc 81
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 tgtgaagtgtttgggggaactc 87
||||||||||||||||||||||
Sbjct: 55 tgtgaagtgtttgggggaactc 76
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 tgtgaagtgtttgggggaactc 87
||||||||||||||||||||||
Sbjct: 54 tgtgaagtgtttgggggaactc 75
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 tgtgaagtgtttgggggaactc 87
||||||||||||||||||||||
Sbjct: 81 tgtgaagtgtttgggggaactc 102
>RF00451;mir-395;AP008210.1/31838919-31838832 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 tgtgaagtgtttgggggaactc 87
||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactc 78
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 tgtgaagtgtttgggggaactc 87
||||||||||||||||||||||
Sbjct: 55 tgtgaagtgtttgggggaactc 76
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 tgtgaagtgtttgggggaactc 87
||||||||||||||||||||||
Sbjct: 81 tgtgaagtgtttgggggaactc 102
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 tgtgaagtgtttgggggaactc 87
||||||||||||||||||||||
Sbjct: 83 tgtgaagtgtttgggggaactc 104
