miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;ABJB010802549.1/5454-5359 6945:Ixodes scapularis
(black-legged tick)
Length = 96
Score = 54.0 bits (27), Expect = 1e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1 ataataacaataataatagtaattattattattgttgtt 39
||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 36 ataataataatactaataataattattattattgttgtt 74
Score = 46.1 bits (23), Expect = 3e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 ataataacaataataatagtaattattatta 31
|||||||||| ||||||| ||||||||||||
Sbjct: 79 ataataacaacaataataataattattatta 49
>RF01059;mir-598;AAWZ01030949.1/37677-37772 28377:Anolis
carolinensis (green anole)
Length = 96
Score = 50.1 bits (25), Expect = 2e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 ataataacaataataatagtaattattattatt 33
||||||| |||||||||| ||||||||||||||
Sbjct: 36 ataataataataataataataattattattatt 68
Score = 44.1 bits (22), Expect = 1e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1 ataataacaataataatagtaattattattattgttgt 38
||||||| |||||||||| | |||||||||||| ||||
Sbjct: 39 ataataataataataataattattattattattattgt 76
Score = 42.1 bits (21), Expect = 4e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 9 aataataatagtaattattattatt 33
|||||||||| ||||||||||||||
Sbjct: 71 aataataataataattattattatt 47
>RF01059;mir-598;AAWZ01026199.1/96868-96773 28377:Anolis
carolinensis (green anole)
Length = 96
Score = 50.1 bits (25), Expect = 2e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 ataataacaataataatagtaattattattatt 33
||||||| |||||||||| ||||||||||||||
Sbjct: 33 ataataataataataataataattattattatt 65
Score = 50.1 bits (25), Expect = 2e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1 ataataacaataataatagtaattattattatt 33
||||||| |||||||||| ||||||||||||||
Sbjct: 76 ataataataataataataataattattattatt 44
Score = 42.1 bits (21), Expect = 4e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1 ataataacaataataatagtaattattattatt 33
||||||| |||||||||| | ||||||||||||
Sbjct: 36 ataataataataataataattattattattatt 68
Score = 42.1 bits (21), Expect = 4e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 1 ataataacaataataatagtaattattattatt 33
||||||| |||||||||| | ||||||||||||
Sbjct: 73 ataataataataataataattattattattatt 41
>RF01059;mir-598;CAAK05038420.1/15051-14956 7955:Danio rerio
(zebrafish)
Length = 96
Score = 50.1 bits (25), Expect = 2e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1 ataataacaataataatagtaattattattatt 33
||||||| |||||||||| ||||||||||||||
Sbjct: 73 ataataataataataataataattattattatt 41
Score = 42.1 bits (21), Expect = 4e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 1 ataataacaataataatagtaattattattatt 33
||||||| |||||||||| | ||||||||||||
Sbjct: 70 ataataataataataataattattattattatt 38
Score = 42.1 bits (21), Expect = 4e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 aataataatagtaattattattatt 33
|||||||||| ||||||||||||||
Sbjct: 38 aataataataataattattattatt 62
>RF01059;mir-598;CR376776.19/176715-176620 7955:Danio rerio
(zebrafish)
Length = 96
Score = 50.1 bits (25), Expect = 2e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1 ataataacaataataatagtaattattattatt 33
||||||| |||||||||| ||||||||||||||
Sbjct: 70 ataataataataataataataattattattatt 38
Score = 42.1 bits (21), Expect = 4e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 1 ataataacaataataatagtaattattattatt 33
||||||| |||||||||| | ||||||||||||
Sbjct: 67 ataataataataataataattattattattatt 35
Score = 42.1 bits (21), Expect = 4e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 aataataatagtaattattattatt 33
|||||||||| ||||||||||||||
Sbjct: 35 aataataataataattattattatt 59
>RF00100;7SK;AALT01414792.1/6905-6590 42254:Sorex araneus (European
shrew)
Length = 316
Score = 48.1 bits (24), Expect = 7e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 21 aattattattattgttgttgttgt 44
||||||||||||||||||||||||
Sbjct: 260 aattattattattgttgttgttgt 237
>RF01059;mir-598;BX004881.17/90499-90594 7955:Danio rerio
(zebrafish)
Length = 96
Score = 44.1 bits (22), Expect = 1e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 7 acaataataatagtaattattattat 32
|||||||||||| |||||||||||||
Sbjct: 64 acaataataataataattattattat 39
>RF01062;MIR812;AACV01011488.1/3477-3307 39947:Oryza sativa Japonica
Group
Length = 171
Score = 42.1 bits (21), Expect = 4e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 taataacaataataatagtaattat 26
|||||||||||| ||||||||||||
Sbjct: 100 taataacaataaaaatagtaattat 124
>RF01062;MIR812;AACV01012070.1/2375-2546 39947:Oryza sativa Japonica
Group
Length = 172
Score = 42.1 bits (21), Expect = 4e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 taataacaataataatagtaattat 26
|||||||||||| ||||||||||||
Sbjct: 102 taataacaataaaaatagtaattat 126
>RF01062;MIR812;AP008208.1/34975479-34975627 39947:Oryza sativa
Japonica Group
Length = 149
Score = 42.1 bits (21), Expect = 4e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 taataacaataataatagtaattat 26
|||||||||||| ||||||||||||
Sbjct: 78 taataacaataaaaatagtaattat 102
>RF01062;MIR812;AP008209.1/6599969-6599799 39947:Oryza sativa
Japonica Group
Length = 171
Score = 42.1 bits (21), Expect = 4e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 taataacaataataatagtaattat 26
|||||||||||| ||||||||||||
Sbjct: 101 taataacaataaaaatagtaattat 125
>RF01062;MIR812;AACV01010653.1/22675-22848 39947:Oryza sativa
Japonica Group
Length = 174
Score = 42.1 bits (21), Expect = 4e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 taataacaataataatagtaattat 26
|||||||||||| ||||||||||||
Sbjct: 103 taataacaataaaaatagtaattat 127
>RF01059;mir-598;AASC02000229.1/26347-26439 6500:Aplysia
californica (California sea hare)
Length = 93
Score = 42.1 bits (21), Expect = 4e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 ataacaataataatagtaattattattat 32
|||| |||||||||| |||||||||||||
Sbjct: 36 ataataataataataataattattattat 64
>RF01059;mir-598;AASC02032772.1/1063-1160 6500:Aplysia californica
(California sea hare)
Length = 98
Score = 42.1 bits (21), Expect = 4e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 24 tattattattgttgttgttgt 44
|||||||||||||||||||||
Sbjct: 98 tattattattgttgttgttgt 78
>RF01059;mir-598;AABR04091048.1/7429-7552 10116:Rattus norvegicus
(Norway rat)
Length = 124
Score = 42.1 bits (21), Expect = 4e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 24 tattattattgttgttgttgt 44
|||||||||||||||||||||
Sbjct: 89 tattattattgttgttgttgt 69
>RF00816;mir-245;AF186960.1/737-648 76215:Hypolimnas bolina
(common eggfly)
Length = 90
Score = 42.1 bits (21), Expect = 4e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 ataataatagtaattattattattg 34
||||||||| |||||||||||||||
Sbjct: 56 ataataataataattattattattg 80
