miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
          (sorghum)
          Length = 110

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 1  ttccacagctttcttgaactgcatctct 28
          ||||||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcatctct 38




>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
           (thale cress)
          Length = 152

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 74  gatttgcggttcaataaagctgtggga 100
           |||||||||||||||||||||||||||
Sbjct: 115 gatttgcggttcaataaagctgtggga 141



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
          trichocarpa
          Length = 135

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 1  ttccacagctttcttgaactgcatctcttagatt 34
          ||||||||||||||||||||||| || |||||||
Sbjct: 11 ttccacagctttcttgaactgcacctattagatt 44



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  tgcggttcaataaagctgtggga 100
           |||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtggga 124




>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
          (castor bean)
          Length = 166

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 1  ttccacagctttcttgaactgcatct 26
          ||||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcatct 36



 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 76  tttgcggttcaataaagctgtggga 100
           |||||||||||||||||||||||||
Sbjct: 131 tttgcggttcaataaagctgtggga 155




>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
          Indica Group
          Length = 117

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 1  ttccacagctttcttgaactgcatct 26
          ||||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcatct 36




>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
          (barrel medic)
          Length = 106

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacagctttcttgaactgcatc 25
          |||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcatc 35



 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 76  tttgcggttcaataaagctgtggga 100
           |||||||||||||||||||||||||
Sbjct: 71  tttgcggttcaataaagctgtggga 95




>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
          Length = 100

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacagctttcttgaactgcatc 25
          |||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcatc 35



 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 76  tttgcggttcaataaagctgtggga 100
           |||||||||||||||||||||||||
Sbjct: 65  tttgcggttcaataaagctgtggga 89




>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
          (papaya)
          Length = 101

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  ttccacagctttcttgaactgcat 24
          ||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 77  ttgcggttcaataaagctgtggga 100
           ||||||||||||||||||||||||
Sbjct: 67  ttgcggttcaataaagctgtggga 90




>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus trichocarpa
          Length = 126

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 77  ttgcggttcaataaagctgtggga 100
           ||||||||||||||||||||||||
Sbjct: 92  ttgcggttcaataaagctgtggga 115



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
          Length = 119

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  ttccacagctttcttgaactgcat 24
          ||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 77  ttgcggttcaataaagctgtggga 100
           ||||||||||||||||||||||||
Sbjct: 85  ttgcggttcaataaagctgtggga 108




>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
          Length = 119

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  ttccacagctttcttgaactgcat 24
          ||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34




>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
          (sorghum)
          Length = 107

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  ttccacagctttcttgaactgcat 24
          ||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34




>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa
          Japonica Group
          Length = 155

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttccacagctttcttgaactgca 23
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33