miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
          (papaya)
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  aagctcaggagggatagcaccatgaa 26
          |||||||||||||||||| |||||||
Sbjct: 15 aagctcaggagggatagcgccatgaa 40




>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
           (castor bean)
          Length = 138

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 43  tctatagcgctatccatcttgagttt 68
           |||||||||||||||||| |||||||
Sbjct: 99  tctatagcgctatccatcctgagttt 124




>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
          pekinensis
          Length = 110

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aagctcaggagggatagcaccatga 25
          |||||||||||||||||| ||||||
Sbjct: 15 aagctcaggagggatagcgccatga 39




>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
          (thale cress)
          Length = 99

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aagctcaggagggatagcaccatga 25
          |||||||||||||||||| ||||||
Sbjct: 15 aagctcaggagggatagcgccatga 39




>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
          trichocarpa
          Length = 129

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aagctcaggagggatagcaccatga 25
          |||||||||||||||||| ||||||
Sbjct: 15 aagctcaggagggatagcgccatga 39




>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
          trichocarpa
          Length = 133

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aagctcaggagggatagcaccatga 25
          |||||||||||||||||| ||||||
Sbjct: 15 aagctcaggagggatagcgccatga 39




>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
          Length = 146

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aagctcaggagggatagcaccatga 25
          |||||||||||||||||| ||||||
Sbjct: 15 aagctcaggagggatagcgccatga 39