miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacaggccggcaactgtat 36
||||||||||||||||||||| || ||||| |||||
Sbjct: 2 tgacagaagagagtgagcacacgcaggcaattgtat 37
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gtgctcacttctctttctgtca 90
||||||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtca 81
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacaggccggcaactgtat 36
||||||||||||||||||||| || ||||| |||||
Sbjct: 2 tgacagaagagagtgagcacacgcaggcaattgtat 37
>RF00073;mir-156;AACV01011046.1/23142-23062 39947:Oryza sativa
Japonica Group
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tgtgctcacttctctttctgtca 90
|||||||||||||||||||||||
Sbjct: 58 tgtgctcacttctctttctgtca 80
>RF00073;mir-156;AY551212.1/74-153 4530:Oryza sativa (rice)
Length = 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tgtgctcacttctctttctgtca 90
|||||||||||||||||||||||
Sbjct: 57 tgtgctcacttctctttctgtca 79
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gtgctcacttctctttctgtca 90
||||||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtca 81
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gtgctcacttctctttctgtca 90
||||||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtca 81
>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gtgctcacttctctttctgtca 90
||||||||||||||||||||||
Sbjct: 62 gtgctcacttctctttctgtca 83
>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacaggccggcaa 30
||||||||||||||||||||| || |||||
Sbjct: 2 tgacagaagagagtgagcacatgcaggcaa 31
>RF00073;mir-156;EU957877.1/286-402 4577:Zea mays
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gtgctcacttctctttctgtca 90
||||||||||||||||||||||
Sbjct: 95 gtgctcacttctctttctgtca 116
>RF00073;mir-156;ABXC01001399.1/20364-20487 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gtgctcacttctctttctgtca 90
||||||||||||||||||||||
Sbjct: 102 gtgctcacttctctttctgtca 123
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gtgctcacttctctttctgtca 90
||||||||||||||||||||||
Sbjct: 64 gtgctcacttctctttctgtca 85
>RF00073;mir-156;ABEU01000369.1/338030-338109
145481:Physcomitrella patens subsp. patens
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacag 22
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacag 23
>RF00073;mir-156;ABEU01001319.1/101465-101387
145481:Physcomitrella patens subsp. patens
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcacag 22
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacag 23
