miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcaccatgaa 26
|||||||||||||||||| |||||||
Sbjct: 15 aagctcaggagggatagcgccatgaa 40
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 tctatagcgctatccatcttgagttt 68
|||||||||||||||||| |||||||
Sbjct: 99 tctatagcgctatccatcctgagttt 124
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcaccatga 25
|||||||||||||||||| ||||||
Sbjct: 15 aagctcaggagggatagcgccatga 39
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcaccatga 25
|||||||||||||||||| ||||||
Sbjct: 15 aagctcaggagggatagcgccatga 39
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcaccatga 25
|||||||||||||||||| ||||||
Sbjct: 15 aagctcaggagggatagcgccatga 39
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcaccatga 25
|||||||||||||||||| ||||||
Sbjct: 15 aagctcaggagggatagcgccatga 39
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcaccatga 25
|||||||||||||||||| ||||||
Sbjct: 15 aagctcaggagggatagcgccatga 39