miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 135 tgatccttttttggattgaagggagctct 163
||||| |||||||||||||||||||||||
Sbjct: 159 tgatcattttttggattgaagggagctct 187
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 136 gatccttttttggattgaagggagctct 163
|||| |||||||||||||||||||||||
Sbjct: 138 gatctttttttggattgaagggagctct 165
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 136 gatccttttttggattgaagggagctct 163
||||| ||||||||||||||||||||||
Sbjct: 146 gatccctttttggattgaagggagctct 173
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 136 gatccttttttggattgaagggagctct 163
||||||| ||||||||||||||||||||
Sbjct: 154 gatccttgtttggattgaagggagctct 181
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 136 gatccttttttggattgaagggagctct 163
||||||| ||||||||||||||||||||
Sbjct: 154 gatccttgtttggattgaagggagctct 181
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 137 atccttttttggattgaagggagctct 163
|||||| ||||||||||||||||||||
Sbjct: 155 atccttgtttggattgaagggagctct 181
