miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
          Length = 113

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 115 gtgttgtcggaccaggcttcattccc 140
           ||||||||||||||||||||||||||
Sbjct: 82  gtgttgtcggaccaggcttcattccc 107




>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
          Length = 148

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 115 gtgttgtcggaccaggcttcattccc 140
           ||||||||||||||||||||||||||
Sbjct: 117 gtgttgtcggaccaggcttcattccc 142




>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
           tobacco)
          Length = 185

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 115 gtgttgtcggaccaggcttcattccc 140
           ||||||||||||||||||||||||||
Sbjct: 156 gtgttgtcggaccaggcttcattccc 181




>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
           trichocarpa
          Length = 134

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 117 gttgtcggaccaggcttcattccc 140
           ||||||||||||||||||||||||
Sbjct: 105 gttgtcggaccaggcttcattccc 128




>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
           (papaya)
          Length = 136

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 115 gtgttgtcggaccaggcttcattccc 140
           |||| |||||||||||||||||||||
Sbjct: 105 gtgtcgtcggaccaggcttcattccc 130




>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
           cress)
          Length = 98

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 119 tgtcggaccaggcttcattccc 140
           ||||||||||||||||||||||
Sbjct: 71  tgtcggaccaggcttcattccc 92




>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
           cress)
          Length = 122

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 115 gtgttgtcggaccaggcttcattccc 140
           |||| |||||||||||||||||||||
Sbjct: 91  gtgtcgtcggaccaggcttcattccc 116




>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
           cress)
          Length = 101

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 119 tgtcggaccaggcttcattccc 140
           ||||||||||||||||||||||
Sbjct: 74  tgtcggaccaggcttcattccc 95




>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
           trichocarpa
          Length = 155

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 119 tgtcggaccaggcttcattccc 140
           ||||||||||||||||||||||
Sbjct: 128 tgtcggaccaggcttcattccc 149




>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
           (castor bean)
          Length = 133

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 115 gtgttgtcggaccaggcttcattccc 140
           |||| |||||||||||||||||||||
Sbjct: 102 gtgtcgtcggaccaggcttcattccc 127




>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
          Length = 156

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 115 gtgttgtcggaccaggcttcattccc 140
           |||| |||||||||||||||||||||
Sbjct: 125 gtgtcgtcggaccaggcttcattccc 150




>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
          Length = 150

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 115 gtgttgtcggaccaggcttcattccc 140
           |||| |||||||||||||||||||||
Sbjct: 119 gtgtcgtcggaccaggcttcattccc 144