miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
trichocarpa
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tcatgtgttctcaggtcgcccctg 77
||||||||||||||||||||||||
Sbjct: 53 tcatgtgttctcaggtcgcccctg 76
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tcatgtgttctcaggtcgcccctg 77
||||||||||||||||||||||||
Sbjct: 105 tcatgtgttctcaggtcgcccctg 128
>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
(barrel medic)
Length = 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tcatgtgttctcaggtcgcccctg 77
||||||||||||||||||||||||
Sbjct: 64 tcatgtgttctcaggtcgcccctg 87
>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tcatgtgttctcaggtcgcccctg 77
||||||||||||||||||||||||
Sbjct: 57 tcatgtgttctcaggtcgcccctg 80
>RF00695;MIR398;CU223654.1/49-129 80863:Populus tremula x Populus
alba
Length = 81
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 catgtgttctcaggtcgcccctg 77
|||||||||||||||||||||||
Sbjct: 49 catgtgttctcaggtcgcccctg 71
>RF00695;MIR398;ABIM01009168.1/9183-9310 3649:Carica papaya (papaya)
Length = 128
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 57 tgtgttctcaggtcgcccctg 77
|||||||||||||||||||||
Sbjct: 98 tgtgttctcaggtcgcccctg 118
>RF00695;MIR398;EU940707.1/90-217 4577:Zea mays
Length = 128
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 catgtgttctcaggtcgcccc 75
|||||||||||||||||||||
Sbjct: 96 catgtgttctcaggtcgcccc 116
>RF00695;MIR398;ABXC01000980.1/272433-272305 4558:Sorghum bicolor
(sorghum)
Length = 129
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 catgtgttctcaggtcgcccc 75
|||||||||||||||||||||
Sbjct: 97 catgtgttctcaggtcgcccc 117
>RF00695;MIR398;AP005783.3/58390-58303 39947:Oryza sativa Japonica
Group
Length = 88
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 57 tgtgttctcaggtcgcccctg 77
|||||||||||||||||||||
Sbjct: 58 tgtgttctcaggtcgcccctg 78
