miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
          (papaya)
          Length = 82

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 1  gacagaagagagtgagcacaggccggcaactgtat 35
          |||||||||||||||||||| || ||||| |||||
Sbjct: 3  gacagaagagagtgagcacacgcaggcaattgtat 37




>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
          (castor bean)
          Length = 83

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 1  gacagaagagagtgagcacaggccggcaactgtat 35
          |||||||||||||||||||| || ||||| |||||
Sbjct: 3  gacagaagagagtgagcacacgcaggcaattgtat 37




>RF00073;mir-156;AACV01011046.1/23142-23062 39947:Oryza sativa
          Japonica Group
          Length = 81

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 67 tgtgctcacttctctttctgtc 88
          ||||||||||||||||||||||
Sbjct: 58 tgtgctcacttctctttctgtc 79




>RF00073;mir-156;AY551212.1/74-153 4530:Oryza sativa (rice)
          Length = 80

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 67 tgtgctcacttctctttctgtc 88
          ||||||||||||||||||||||
Sbjct: 57 tgtgctcacttctctttctgtc 78