miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
           trichocarpa
          Length = 148

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 62  catggaagctcaagaaagctgtggga 87
           ||||||||||||||||||||||||||
Sbjct: 112 catggaagctcaagaaagctgtggga 137




>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
          (thale cress)
          Length = 136

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacagctttcttgaactttctt 25
          |||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactttctt 35



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 64  tggaagctcaagaaagctgtggga 87
           ||||||||||||||||||||||||
Sbjct: 102 tggaagctcaagaaagctgtggga 125




>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
           (papaya)
          Length = 159

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 66  gaagctcaagaaagctgtggga 87
           ||||||||||||||||||||||
Sbjct: 127 gaagctcaagaaagctgtggga 148




>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
          trichocarpa
          Length = 157

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  ttccacagctttcttgaactttcttg 26
          ||||||||||||||||||||| ||||
Sbjct: 11 ttccacagctttcttgaacttccttg 36



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 62  catggaagctcaagaaagctgtggga 87
           ||||||||||||||||||| ||||||
Sbjct: 121 catggaagctcaagaaagccgtggga 146




>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
          (barrel medic)
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 66 gaagctcaagaaagctgtggga 87
          ||||||||||||||||||||||
Sbjct: 72 gaagctcaagaaagctgtggga 93




>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
          Length = 113

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 66  gaagctcaagaaagctgtggga 87
           ||||||||||||||||||||||
Sbjct: 81  gaagctcaagaaagctgtggga 102




>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
          pine)
          Length = 108

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  ttccacagctttcttgaacttt 22
          ||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttt 32