miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 134 tgatccttttttggattgaagggagctc 161
||||| ||||||||||||||||||||||
Sbjct: 159 tgatcattttttggattgaagggagctc 186
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 135 gatccttttttggattgaagggagctc 161
|||| ||||||||||||||||||||||
Sbjct: 138 gatctttttttggattgaagggagctc 164
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 135 gatccttttttggattgaagggagctc 161
||||| |||||||||||||||||||||
Sbjct: 146 gatccctttttggattgaagggagctc 172
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 135 gatccttttttggattgaagggagctc 161
||||||| |||||||||||||||||||
Sbjct: 154 gatccttgtttggattgaagggagctc 180
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 135 gatccttttttggattgaagggagctc 161
||||||| |||||||||||||||||||
Sbjct: 154 gatccttgtttggattgaagggagctc 180
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 136 atccttttttggattgaagggagctc 161
|||||| |||||||||||||||||||
Sbjct: 155 atccttgtttggattgaagggagctc 180
