miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY083681.1/2468-2333 4498:Avena sativa (oat)
Length = 136
Score = 270 bits (136), Expect = 6e-72
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 20 gaactactccctccgtcacaaaaaggatgtctcaagtttgtttgaatttggacgaatcta 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaactactccctccgtcacaaaaaggatgtctcaagtttgtttgaatttggacgaatcta 60
Query: 80 tatattaaatagtgtctagatacatccaagtttagacaaatttgatacatccttttcggg 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatattaaatagtgtctagatacatccaagtttagacaaatttgatacatccttttcggg 120
Query: 140 acggagggagtacatg 155
||||||||||||||||
Sbjct: 121 acggagggagtacatg 136
>RF00906;MIR1122;EU730897.1/94709-94844 15368:Brachypodium
distachyon
Length = 136
Score = 60.0 bits (30), Expect = 1e-08
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 21 aactactccctccgtcacaaaaaggatgtctcaagtttgtttgaatttggacgaatctat 80
|||||||||||||||| | ||| |||||||||||||| | |||||| ||| ||||||
Sbjct: 135 aactactccctccgtccaacaaaagatgtctcaagtttatcaaaatttgaacgtatctat 76
Query: 81 atattaaatagtgtctagatacatccaagtttagacaaatttgatacatc 130
| | ||| | |||||||||||||| || ||| |||||| |||| |||||
Sbjct: 75 acactaagtcatgtctagatacatctaaattttgacaaagttgagacatc 26
>RF00906;MIR1122;EF059989.1/67769-67635 29664:Brachypodium
sylvaticum
Length = 135
Score = 58.0 bits (29), Expect = 4e-08
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 89 tagtgtctagatacatccaagtttagacaaatttgatacatccttttcgggacggaggga 148
|||||||||||||||| ||| |||| ||| ||| | ||||||||||| |||||||||||
Sbjct: 67 tagtgtctagatacattcaaatttaagcaattttcagacatccttttctggacggaggga 8
Query: 149 g 149
|
Sbjct: 7 g 7
>RF00906;MIR1122;EU730901.1/71726-71862 15368:Brachypodium
distachyon
Length = 137
Score = 56.0 bits (28), Expect = 2e-07
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 92 tgtctagatacatccaagtttagacaaatttgatacatccttttcgggacggagggagta 151
||||||||||||||||| ||| |||||| |||| ||||||||| |||||||||||||
Sbjct: 64 tgtctagatacatccaatttttgacaaacttgagacatcctttgttagacggagggagta 5
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 24 tactccctccgtcacaaaaaggatgtctcaagtttgt 60
||||||||||||| | ||||||||||||||||||||
Sbjct: 5 tactccctccgtctaacaaaggatgtctcaagtttgt 41
>RF00906;MIR1122;EU730895.1/46100-45965 15368:Brachypodium
distachyon
Length = 136
Score = 48.1 bits (24), Expect = 4e-05
Identities = 105/132 (79%)
Strand = Plus / Plus
Query: 20 gaactactccctccgtcacaaaaaggatgtctcaagtttgtttgaatttggacgaatcta 79
||||||||||||||||| | ||| ||||||||||||| || |||||||| | || ||
Sbjct: 1 gaactactccctccgtccaacaaaagatgtctcaagttcgtcaaaatttggatgtattta 60
Query: 80 tatattaaatagtgtctagatacatccaagtttagacaaatttgatacatccttttcggg 139
| || | |||||| || || ||| ||| ||||| |||| |||| ||||||||| ||
Sbjct: 61 gacatgacttagtgtatacatgcattcaaatttagtcaaagttgagacatcctttgttgg 120
Query: 140 acggagggagta 151
||||||||||||
Sbjct: 121 acggagggagta 132
>RF00906;MIR1122;EU730899.1/36951-37090 15368:Brachypodium
distachyon
Length = 140
Score = 48.1 bits (24), Expect = 4e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 92 tgtctagatacatccaagtttagacaaatttgatacatccttttcgggacggagggagta 151
||||||||| |||||| ||| ||||||||||| ||||| ||| ||||||||||||||
Sbjct: 64 tgtctagatttatccaaattttgacaaatttgagacatcttttattggacggagggagta 5
>RF00906;MIR1122;EU730900.1/33277-33412 15368:Brachypodium
distachyon
Length = 136
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 21 aactactccctccgtcacaaaaaggatgtctcaagtttgt 60
|||||||||||||||| | ||| ||||||||||||||||
Sbjct: 2 aactactccctccgtccaacaaaagatgtctcaagtttgt 41
Score = 48.1 bits (24), Expect = 4e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 92 tgtctagatacatccaagtttagacaaatttgatacatccttttcgggacggagggagta 151
||||||||||||| ||| ||| |||||| |||| ||||| ||| ||||||||||||||
Sbjct: 64 tgtctagatacattcaaattttgacaaacttgagacatcttttgttggacggagggagta 5
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 2e-04
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 99 atacatccaagtttagacaaatttgatacatccttttcgggacggagggagtaca 153
||||||||| ||||||||||||| | ||| | ||| |||||||||||||||||
Sbjct: 57 atacatccatatttagacaaatttaagacaacaattttgggacggagggagtaca 3
>RF00906;MIR1122;AC120889.3/147220-147343 39947:Oryza sativa
Japonica Group
Length = 124
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 21 aactactccctccgtcacaaaaa 43
|||||||||||||||||||||||
Sbjct: 123 aactactccctccgtcacaaaaa 101
>RF00906;MIR1122;AAAA02020879.1/5788-5634 39946:Oryza sativa Indica
Group
Length = 155
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 132 ttttcgggacggagggagtaca 153
||||||||||||||||||||||
Sbjct: 24 ttttcgggacggagggagtaca 3
