miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AP004043.3/15829-15652 39947:Oryza sativa Japonica
Group
Length = 178
Score = 69.9 bits (35), Expect = 6e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 3 ggccatgctctccacaggctttcttgaactgtcaactcg 41
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 ggccatgctctccacaggctttcttgaactgtgaactcg 39
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 70 gttgatggttcaagaaagtccttggaaaacatg 102
|||||| ||||||||||||||||||||||||||
Sbjct: 142 gttgatagttcaagaaagtccttggaaaacatg 174
>RF00648;MIR396;ABXC01003010.1/105635-105521 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 70 gttgatggttcaagaaagtccttggaaaacatg 102
|||||||||||||||||||||||||||||||||
Sbjct: 79 gttgatggttcaagaaagtccttggaaaacatg 111
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 3 ggccatgctctccacaggctttcttgaactgtcaactcg 41
||||||| |||||||||||||||||||||||| ||||||
Sbjct: 1 ggccatgttctccacaggctttcttgaactgtgaactcg 39
>RF00648;MIR396;EU950590.1/116-359 4577:Zea mays
Length = 244
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 6 catgctctccacaggctttcttgaactgtcaactcg 41
|||||| |||||||||||||||||||||| ||||||
Sbjct: 4 catgctttccacaggctttcttgaactgtgaactcg 39
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 70 gttgatggttcaagaaagtccttggaaaacatgc 103
|||||||||||||||||| || |||||| |||||
Sbjct: 208 gttgatggttcaagaaagcccatggaaaccatgc 241
>RF00648;MIR396;ABXC01004473.1/64146-64350 4558:Sorghum bicolor
(sorghum)
Length = 205
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 6 catgctctccacaggctttcttgaactgtcaactcg 41
|||||| |||||||||||||||||||||| ||||||
Sbjct: 4 catgctttccacaggctttcttgaactgtgaactcg 39
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 70 gttgatggttcaagaaagtccttggaaaacatgc 103
|||||||||||||||||| || |||||| |||||
Sbjct: 169 gttgatggttcaagaaagcccatggaaaccatgc 202
>RF00648;MIR396;AL732351.2/3841-4022 4530:Oryza sativa (rice)
Length = 182
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 6 catgctctccacaggctttcttgaactgtcaactcg 41
|||||| |||||||||||||||||||||| ||||||
Sbjct: 4 catgctttccacaggctttcttgaactgtgaactcg 39
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 70 gttgatggttcaagaaagtccttggaaaacatgcc 104
|||||||||||||||||| || |||||| ||||||
Sbjct: 146 gttgatggttcaagaaagcccatggaaaccatgcc 180
>RF00648;MIR396;AC226038.1/95545-95657 4641:Musa acuminata
Length = 113
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 6 catgctctccacaggctttcttgaactgtcaact 39
|||| |||||||||||||||||||||||| ||||
Sbjct: 4 catgttctccacaggctttcttgaactgtgaact 37
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 gttcaagaaagtccttggaaaacatg 102
||||||||||||||||||||||||||
Sbjct: 84 gttcaagaaagtccttggaaaacatg 109
