miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
          Length = 187

 Score = 93.7 bits (47), Expect = 8e-19
 Identities = 109/128 (85%), Gaps = 5/128 (3%)
 Strand = Plus / Plus

                                                                       
Query: 47  cagctgcttgttcatggttcccactatcctatctccattagaacacgaggagataggctt 106
           ||||||||||||||||||||||||||| ||||||| ||  ||| |    |||||||||||
Sbjct: 53  cagctgcttgttcatggttcccactattctatctc-ataggaaaa----gagataggctt 107

                                                                       
Query: 107 gtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtttggattgaagg 166
           ||||||||||||| | ||||||||  || |  ||| ||||||| || |||||||||||||
Sbjct: 108 gtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctttggattgaagg 167

                   
Query: 167 gagctctg 174
           ||||||||
Sbjct: 168 gagctctg 175




>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
          Length = 233

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                       
Query: 96  gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
           |||||||||||||||||||||||| |||||||| ||  ||  |||| |||| ||||| ||
Sbjct: 143 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 202

                              
Query: 156 tggattgaagggagctctg 174
           |||||||||||||||||||
Sbjct: 203 tggattgaagggagctctg 221



 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 73/81 (90%), Gaps = 2/81 (2%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggagctcctatcattccaatgaagggtc-taccggaagggtttgtgcagctgcttgttca 60
          |||||||||||||||||||||||||||| ||||| |||||   || | |||||| |||||
Sbjct: 12 ggagctcctatcattccaatgaagggtcgtaccg-aagggccggttccgctgctcgttca 70

                               
Query: 61 tggttcccactatcctatctc 81
          |||||||||||||||||||||
Sbjct: 71 tggttcccactatcctatctc 91




>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
           (sorghum)
          Length = 244

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                       
Query: 96  gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
           |||||||||||||||||||||||| |||||||| ||  ||  |||| |||| ||||| ||
Sbjct: 154 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 213

                              
Query: 156 tggattgaagggagctctg 174
           |||||||||||||||||||
Sbjct: 214 tggattgaagggagctctg 232



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 49 gctgcttgttcatggttcccactatcctatctc 81
          |||||| ||||||||||||||||||||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcctatctc 90



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 4  agctcctatcattccaatgaaggg 27
          ||||||||||||||||||||||||
Sbjct: 14 agctcctatcattccaatgaaggg 37




>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
          Length = 222

 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 71/80 (88%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                       
Query: 96  gagataggcttgtggtttgcatgatcgaggagccgcttcgatccct-cgctgaccgctgt 154
           ||||| |||||||||||||||||| |||||||| || |||  |||| || ||||||||||
Sbjct: 131 gagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgctgt 190

                               
Query: 155 ttggattgaagggagctctg 174
           ||||| ||||||||||||||
Sbjct: 191 ttggagtgaagggagctctg 210



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 47 cagctgcttgttcatggttcccactatcctatctc 81
          |||||||| |||||||||||||||| ||| |||||
Sbjct: 56 cagctgctcgttcatggttcccactgtcccatctc 90




>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
          (sorghum)
          Length = 228

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 48 agctgcttgttcatggttcccactatcctatctc 81
          ||||||| |||||||||||||||||||| |||||
Sbjct: 57 agctgctcgttcatggttcccactatcccatctc 90




>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
           (papaya)
          Length = 194

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 152 tgtttggattgaagggagctct 173
           ||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181




>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
           (castor bean)
          Length = 194

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 152 tgtttggattgaagggagctct 173
           ||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181




>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
          Length = 194

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 152 tgtttggattgaagggagctct 173
           ||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181