miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 93.7 bits (47), Expect = 8e-19
Identities = 109/128 (85%), Gaps = 5/128 (3%)
Strand = Plus / Plus
Query: 47 cagctgcttgttcatggttcccactatcctatctccattagaacacgaggagataggctt 106
||||||||||||||||||||||||||| ||||||| || ||| | |||||||||||
Sbjct: 53 cagctgcttgttcatggttcccactattctatctc-ataggaaaa----gagataggctt 107
Query: 107 gtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtttggattgaagg 166
||||||||||||| | |||||||| || | ||| ||||||| || |||||||||||||
Sbjct: 108 gtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctttggattgaagg 167
Query: 167 gagctctg 174
||||||||
Sbjct: 168 gagctctg 175
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 85.7 bits (43), Expect = 2e-16
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
|||||||||||||||||||||||| |||||||| || || |||| |||| ||||| ||
Sbjct: 143 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 202
Query: 156 tggattgaagggagctctg 174
|||||||||||||||||||
Sbjct: 203 tggattgaagggagctctg 221
Score = 81.8 bits (41), Expect = 3e-15
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 2 ggagctcctatcattccaatgaagggtc-taccggaagggtttgtgcagctgcttgttca 60
|||||||||||||||||||||||||||| ||||| ||||| || | |||||| |||||
Sbjct: 12 ggagctcctatcattccaatgaagggtcgtaccg-aagggccggttccgctgctcgttca 70
Query: 61 tggttcccactatcctatctc 81
|||||||||||||||||||||
Sbjct: 71 tggttcccactatcctatctc 91
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 85.7 bits (43), Expect = 2e-16
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
|||||||||||||||||||||||| |||||||| || || |||| |||| ||||| ||
Sbjct: 154 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 213
Query: 156 tggattgaagggagctctg 174
|||||||||||||||||||
Sbjct: 214 tggattgaagggagctctg 232
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 49 gctgcttgttcatggttcccactatcctatctc 81
|||||| ||||||||||||||||||||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcctatctc 90
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 agctcctatcattccaatgaaggg 27
||||||||||||||||||||||||
Sbjct: 14 agctcctatcattccaatgaaggg 37
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 79.8 bits (40), Expect = 1e-14
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccct-cgctgaccgctgt 154
||||| |||||||||||||||||| |||||||| || ||| |||| || ||||||||||
Sbjct: 131 gagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgctgt 190
Query: 155 ttggattgaagggagctctg 174
||||| ||||||||||||||
Sbjct: 191 ttggagtgaagggagctctg 210
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 47 cagctgcttgttcatggttcccactatcctatctc 81
|||||||| |||||||||||||||| ||| |||||
Sbjct: 56 cagctgctcgttcatggttcccactgtcccatctc 90
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 48 agctgcttgttcatggttcccactatcctatctc 81
||||||| |||||||||||||||||||| |||||
Sbjct: 57 agctgctcgttcatggttcccactatcccatctc 90
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tgtttggattgaagggagctct 173
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tgtttggattgaagggagctct 173
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 tgtttggattgaagggagctct 173
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181