miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 321 atatgcctggctccctgtatgcca 344
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 321 atatgcctggctccctgtatgcca 344
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 321 atatgcctggctccctgtatgcca 344
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 321 atatgcctggctccctgtatgcca 344
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 321 atatgcctggctccctgtatgcca 344
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 321 atatgcctggctccctgtatgcca 344
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 322 tatgcctggctccctgtatgcca 344
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana (thale
cress)
Length = 87
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 322 tatgcctggctccctgtatgcca 344
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana (thale
cress)
Length = 85
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 322 tatgcctggctccctgtatgcca 344
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus trichocarpa
Length = 90
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 322 tatgcctggctccctgtatgcca 344
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 322 tatgcctggctccctgtatgcca 344
|||||||||||||||||||||||
Sbjct: 1 tatgcctggctccctgtatgcca 23
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 322 tatgcctggctccctgtatgcca 344
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
Length = 100
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 321 atatgcctggctccctgtatgcc 343
|||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcc 23
